RNA id: AMCG00009226


Basic Information

Item Value
RNA id AMCG00009226
length 3165
RNA type mRNA
GC content 0.49
exon number 28
gene id AMCG00009226
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29717027 ~ 29742605 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATTCCTCACAAAATAATCCATgcgtctgtttttgtttgtttgtatatgtgtgtagtTTGGCCTGCAGGAACCTGGTTGCCAGTAAATCGGGGCTGAAGGTACGCATCCCCTTGCAGAAGCTGCACCCGCTGTCCCGCTCCATCCACCACAGGAACTCCCAGGGCACCAACTCTCACAGACCTCCCCCATGCTGTGCAGCTCGACACTTCACCTCTCTGTCCCGCCTGCCAGTGCGGCCAGCCCTGCCCCTGCCCGGTGCACATGGCTACCAACCTCACCGCACCTTCTGGGTGGCTAGGCTGGCAACCAGGCTGCTGCGGCTTCGTTATCTTTTGCTGGGGTCGGCGGTGGGGGGAGGCTATACTGCGAAAAAGACTTATGATGAATGGAAGGACATGTTGCCAGATCTCAGTGAATATAAGTGGATTGTGCCCGATTTTATCTGGGAGCTTGATGAACATATTGATTTTGaaAAAATCGCCAATGCCCTTCCTGATGCAGAGTATCTCGCCAAGCTGCTGCCTGACTTTGAGAAGATTGGAGAGAACTTCAGCTTCTTGAAAGGCCTGATTTCAAAAGGTGTGAGTGTGGTTAGTGAAGTCACAGGAGCTTCTGGTCTGCATCTGTTGTTAGtttttttttttagttttgttttattttactgttttcttCCTCacctccttccctcccctctctcctttgTAACCACACAACAGGGTCTGCTTGGGGAGCTCATTCTCATACAGCAGCAAATCCAGGAGCACGAGGAGGCGGCGCGCAGGGCCACAGGCTATAACGCAAGCTCCTCGCAGCAGAAGCGCAAGgtATCTGATAAAGAAAAAGCTGAACAACTTCAAGAGGAACTTCTTCGGACTCAGATGAAGTACCAGAGAATACTTGAGCGCCTTGagaaggagaacaaggaactaAGGAAAGTGGTGCTACAGAAAGATGACAAAGGCATCCACCAGAGAAAGGTCAAGAAGTCCTTAATTGACATGTACTCCGAGGTTTTGGACATCCTGTCGGACTATGATTCCAACTATAACACCCAGGATCACCTGCCAAGGGTTGTGGTGGTTGGAGACCAGAGTGCTGGCAAGACCAGTGTCCTGGAGATGATTGCCCAAGCCAGGATATTCCCCCGGGGGTCTGGGGAAATGATGACTCGAGCACCTGTCAAGGTGACTCTGAGTGAGGGTCCTCACCACGTGGCTATGTTTAAAGACAGCACCCGTGAGTTCGATCTCAGCAAAGAAGAAGATCTTGCTGCCTTAAGACATGAAATTGAAATCAGGATGCGGAAGAGTGTCAAGGAAGGACAGACAGTCAGCCCAGAGaCCATCTCTCTGAGCGTGAAGGGCCCTGGAATACAAAGAATGGTGCTGGTGGACCTGCCCGGGGTTATCAGTaCGGTGACCTCTGGTATGGCGGCAGACACTAAAGAGACCATTTTCAGCATAAGCAAGGCCTACATGCAGAACCCCAATGCCATCATTCTCTGCATTCAAGATGGCTCTGTGGATGCTGAGCGTAGTATTGTGACTGACCTGGTCAGTCAGATGGACCCCCAGGGCAAAAGGACCATCTTTGTGTTGACCAAAGTGGACCTAGCTGAGAAGAACCTGGCCAGCCCCAGCAGGATTCAACAAATTGTTGAAGGAAGACTATTTCCTATGAAGGCTTTGGGGTATTTTGCTGTTGTAACTGGGAAAGGTAGTAGCAGTGAAAGTATTGACTCTATTAAAGACTATGAAGAGGACTTTTTCCAGAATTCCACATTACTGAAGACTGGGATGCTGAAGGCCCATCAGGTGACGACTAAAAACCTGAGTCTGGCTGTGTCCGACTGTTTCTGGAAGATGGTCCGTGAGTCAGTGGAGCAGCAGGCCGATGCATTTAAAGCATCACGCTTCAACCTGGAGACAGAGTGGAAGAACAATTACCCTCGGCTACGAGAACTTGACAGGAATGAACTCTTTGAAAAAGCCAAGAATGAAATCTTGGATGAAGTGATCAGCCTGAGTCAAGTTACACCAAAACATTGGCAAGTGATTTCCTTTTTTAGGAGTGTGTGTAAGATTAAGACTATGGGGGAGGCTATTCTTCAGAAGAAGCTGTGGGAGAGAGTGTCCACTCATGTGATTGAGAACATCTACCTACCTGCTGCCCAGACCATGAACTCTGGAACCTTTAACACCACTGTTGACATCAAACTCAAGCAATGGACAGACAAGCAGCTACCGCATAAGGCACTGGAGGTGGCCTGGGAGACTCTTCAGGAAGAGTTTGCCCGTTTCATGTGTGAATATAAAGGCAAAGACCAAGACGACATCTTTGATAAGCTCAAAGAGGCCGTTAAAGATGAGAGCATAAAACGACACAACTGGAATGAACGTGCCGAGGATAGCTTGaGAGTAATCCAACACAACGCTTTAGAGGACCGTTCCATAACGGACAAACCACAGTGGGATGCGGCAATTCAGTTTATGGAGGAGACTCTTCAGACTCGCCTCAACGACACCGAATCTGTCATCTCAGATATGGTGGGGCCTGACTGGAAGCAGAGATGGCTGTACTGGACAAGTCGCACTGCAGACCAACACATTCATAATGAAACCAAAAATGAACTGGAGAGGCTGCTGAAGCTGAATGAGGACCACACGGCTTATCTTGCCAACGACGAGGTCACAACCGTGAGAAAAAACCTGGAATCCCGGGGTGTGGAGGTGGACCCTGTTTTGATTAAGGACACATGGCATCAAATGTATCGACGCCACTTCCTTCAGAAAGCACTGTCTCACTGCAACCTCTGTCGAAGAGGTTTCTATTACTATCAGCGGCACTTTGAGGACTCGGAGCTGGAGTGCAATGATGTGGTCCTGTTCTGGCGGATTCAGAGAATGCTTGGAATTACAGCAAACACCCTCAGACAGCAGCTCACAAACACTGAAGTTCGTCGCCTGGAAAAGAACGTGAAGGAGGTGCTGGAGGACTTCGGGGAAGATGTTGAGAAGAAGGTCCACCTGATAACAGGCCGGAGAGTGCAGTTAGCCGAGGACCTCAGTGAGTATAGCCCGCTGAGTTGTTTATTACCAAGTCAGCAGCTGTGTGGGACCTGGCAATGGGCTGCTACGAGAGAGTGCGCCCTGACAAATTAG

Function

GO: NA

KEGG:

id description
K17079 OPA1; optic atrophy protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69374 lncRNA upstream 75091 29641489 ~ 29641936 (+) True G55512
TU69342 lncRNA upstream 258284 29458421 ~ 29458743 (+) True G55487
TU69312 lncRNA upstream 529072 29186694 ~ 29187955 (+) True G55463
TU69310 lncRNA upstream 531843 29184921 ~ 29185184 (+) True G55461
TU69229 lncRNA upstream 685549 29029318 ~ 29031478 (+) True G55394
TU69445 lncRNA downstream 115690 29858295 ~ 29932152 (+) False G55564
TU69444 lncRNA downstream 187170 29929775 ~ 29932152 (+) True G55564
TU69469 lncRNA downstream 232998 29975603 ~ 29976267 (+) True G55586
TU69479 lncRNA downstream 251017 29993622 ~ 29994641 (+) True G55595
TU69480 lncRNA downstream 252958 29995563 ~ 29995870 (+) True G55596
AMCG00009227 mRNA upstream 63690 29648617 ~ 29653337 (+) True AMCG00009227
AMCG00009222 mRNA upstream 143974 29563108 ~ 29573053 (+) True AMCG00009222
AMCG00009223 mRNA upstream 187533 29528879 ~ 29529494 (+) True AMCG00009223
AMCG00009224 mRNA upstream 229872 29484543 ~ 29487155 (+) True AMCG00009224
AMCG00009225 mRNA upstream 246503 29461485 ~ 29470524 (+) True AMCG00009225
AMCG00009231 mRNA downstream 116320 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009237 mRNA downstream 266197 30008802 ~ 30009842 (+) True AMCG00009237
AMCG00009238 mRNA downstream 444295 30186900 ~ 30208729 (+) True AMCG00009238
AMCG00009239 mRNA downstream 476264 30218869 ~ 30223477 (+) True AMCG00009239
AMCG00009250 mRNA downstream 522648 30265253 ~ 30298128 (+) True AMCG00009250
TU69299 other upstream 542327 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 610119 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other upstream 610119 29103640 ~ 29106908 (+) False AMCG00009208
TU69199 other upstream 705259 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 939406 28766454 ~ 28777621 (+) False AMCG00009204
TU69455 other downstream 165306 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 252521 29995126 ~ 29995438 (+) True G55591
TU70069 other downstream 2419155 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 4258191 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 4273065 34015670 ~ 34018815 (+) True G56369

Expression Profile