RNA id: AMCG00009229


Basic Information

Item Value
RNA id AMCG00009229
length 4774
RNA type mRNA
GC content 0.43
exon number 12
gene id AMCG00009229
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29660960 ~ 29704929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTCCAATAAGAAGCGTCTGGCCCCCGGGGGCAGGCTAAGCTGGGGCAAGGGCCACAGCGGCGACTCTGGCTCCAAGCCCGCTGAACAGGGTTTGCTGTCTGTGTCGCACGTGACCCCTGCTGACCCCTGTGATCTTCTGTTTGCAGTGTGCCGAGACTTCGCAGTGTTGGAGGACCATACGCTGGCGCACAGCCTTCAGGAACAGGAAATCGAGAGTCACCTGGCGTCCAATGTCCACAAGAGCCGTTTAGTGCAGCAGGACCTGCAGGTGGCCAAGAGGCTGCAGGAAGAAGAGGACCTGAGGGCTAAAGCTCGCATCCATAGACAACACAGAGACATAGAGAAGAGTGACAATGAAATTGCACAagaaatccaggagcagctagTAAAGCAGGCAGAGCAGCAACGACAGCAAGAAGAGAAAGATGAGGCTATTGCTCGCAAAATGCAGgaaaaagaaatgaaggaagagaggaggaggaagaaacaGCTTCAGGAAGTGCCCTATGAAGAGGAATACTATGAGGAGAAAGGAGACCGCGGCCGGGTCAGACACCCTGAGCACGAGCCTCTGGACCACAGGAGAGGGCGAAGGCCTCACAGTGGTGACAGAGAGCGTAAAATCAGGCCGGAGTCTCGCAGCTCACAGCTCACCTTCCACAGCGAGAGCGAAGAGAGGCACAGGAGGGACCGAGGGCATAGGTCTCCGCCGCACAGGGTTCAGGAGCACACAGACTCGGACAGGGTGGTGCGCAGGAAAGAGAGGCCACAGAGGCCCCCCCCGCCACAAAGCAGCAGAGATCACAGCAGGGAGCGCAGGAAAAGGGCCAGCCAGGAAGACGTTGTTCTTAGCACTAACAAAGGCTCATCTGTGGAGCAGAATGTTGACTTTGAGGACTATGGAGACCGGCAGAGGCTGGATGATGAGGTTTTTGAGGAGCACAGGCACaaaagggaggagaggagagagcacaAGGGCCGTTCTGAAGACAGAGCACTCACACATTCAAATGAGGACATACACCCCCGccacaacaaccaccaccaccaccaccacccccccagaGACACAGGTCGGAGAGTGCGAGCGGAGTACGGTGTGAGAGACGTGACTCAGGGCATCGCCCGCATGGACCTCAGAGAGCAGGAGCTCAAGGACCTTGAAGTGGCCAGGAGACTACAAGAGGAAGAGCTGAAAGCAAGCCACGTAGACAAGAGAGCAGCACAAGTGGCGCAGGATGAGGAAATTGCCCGGTTGCTAATGGAGGAAGAGAAGAAGgtttacaagaaaacaagagaTAGGGAAAAGGGCTGTGTGGACAAGAGAAGACCGGAGGGGGAGTGGAAGCAGGAGCCGGAGGAAGTTGTGCGGCCGCGGTCTCGGGAAGAGTACGAATACCAGAAACCCAGAAACCACAAACCAGCCCGGCCGCCACCACCTATGAATGACTATGAGAATGTGGATTCAAGATATGCATACCCAGGCTCCCCGTGCTCTCCCAGACCCTCCACCAGACCTGAGGCAGCATATAAAGGTTATAGGCAGTGACCCAGGCTGCCTGCCGAGattcttcctttgttttttttttctccatcatATGGTGTTGAAGAAGGAACCAGAAgcttccccccaaaaaacaagtCTTTCAGAGATGCAACTGACTTTCCCAAACCCGTTTGCTTTCTGTCtgaagagagagactgagaatCTCGGGAGATGTACAGCAAGAACAAGCACAgacaactttattttatttttattttctgattggCAATTCATCGAAAATGTGAAAAGGATGTATTCCTACATtgcttacatttacatttagaaggaaaaaaatgatcaTCCAAAATCATTGCAGAAGAGGGGCACCTGTAAGCTCTCTAACTGTTCAGTTTGAACAGGGCAATCCTGTGCAGGCCTGCATGAAGACGTACATCTTTTAAACTGGTCAGTTTTCTGTGTCTTATCTATCGCAGCGCATCAACAGTGTATTCGTTTATGGGCTTTGGATAATTCCAGATGGACGCTCACCAAAGCAATATTGATATCGATGGTGGCTCTGATATCATACCTCTTTGTGGTGCTTACATTATATACACTTTgtgctatttaaatattaataaaggcAACGACTGGAATTGCACACAAGGGCAGGCTTAAACAAAAGACCTAATCAGCCCAGATTTAAGAGATTTTTTCTCCCACCTGCATTTTACAGAAagctgtagtattttttttttatggtaacattttgtatttatgggGAGAAAGGTGAGGCAATCTGTACACCTGCTTTTGACACCTGGGCCTGGTGTGTCATAGCCTTTAAACTGTGACGGGAACATTCCTAATGAGGGACGtatgatgtatttaattaaaacaaatttcatCCAGTAGGTTTTTCGGTGGATGGACACATTCAGTTGACCATGggtaaatgcaaaacattttggtGTCTTGACGGTTATGAACATGctgaaaatgtgaacattttcacaaagtCACTAACCATTAAGTGATATGTTACTAAAGCACGATATGTCTACCCAAGatcatttgaatgcatttccaTTCCATGAGAAAAACTAAAGCACAATAACTAAAATAGTAACAATACCTCCTACtctgaggttttgttttgataacaTATCATTGAAAGTAACCTTTAAAGGGAACTATTTTCATAGCTGGATGCCATTCATAATCATGGTCTGTGAATTGTTGTGTAGCTTATTAGCCAGATTGTGTGGACCTGCAAGCAGCAACAAGTTTAGCAAGGTGACAACCCAGGTTAACTGTGGTGCCTTTTGTGAACAAGTTTGTAACAACAGTCTGTGATATGTATGCATAATAAGTAAGTGAGCATCATATTGTATATTCCTGTAAATTGTGATGTGAATTATATTGGACACAGCTGTGTATAGTTCAATTTCCATATGAATCTCTTTCTGTAAAGTACAAGTTACCGGTCTGAACTGGATCATACTCGGTCATCATGCTGGAACTGGGTCACTGAGTCATACTGTGCCCACACGGACCGAGTATCTCTTTAGGTCGGTATCGAGGTACTGTAACTGAGACCTTGAGATGGTGTGCGTCTTGGTGACAAAATCTGTCACTGGTAGAGAAATTATGCCagttgattatttttatatattttttaactttttaagaTAATTTGTCACATTTTTCCTCAATTTTCTTGTTGCAGCATTGACAGGCCATGGACAAATGACTTTACCCCCATTGCAGACCAGGgataaaatgcaatatattttaagtatttatatcTTAGAAAGcctataatgaaatacataaagaaCAAATGGTTTATgtcacattaatacattaatagttCTCCGTGCACAGCCCAGTGTTTTCAGTAAGATCAAGGTTTGGCACAAGCACCAATCTGCCAGACACGTGCATTTGTATAGTTGTCATCCTGAGAGGCCATTCTCCAGAGATGTTAGCTGAGTGCAGGGTCAGTCtccttgttttaaaaacaaaaaaattaaatggtgtatataaaacaaaaaggaagagaaataTCCCCTTAATGACTTAATAAAGGTTACTAACAAGTATTgcacaaatgtaaaaagaaaattaaattatagaaacaatgtcaggatttttttttgttttttttctcacaatttcaaatgaaaagctTAATTCtcggtttattttttattcatttgattttgtGTTATTGAAAGTGTTGGGGACACGGTGTTAATAGGTCTGTGaaggcaaaaataataattatatattttcaaaaaaactTCTGGAAACTCTTTTGGGGCCTACGAGCCTGCATTACTCTGTGatcatcaaatatattttttatttattatacctGTGTTTTGTCAAAATATGTGCTGTTTGTCAAGTTggtgagaaacaaaaacaaaggtcCTGCTATGGATTGTGTGCCAAATGTGTTTGTTCTACCAATGAAACTTGCAGGGTTTTTATCATTctaggatttaaaaatgtaagcttgttttaaactgttctgGTATTCAACATATTTATCAGCAACTGCTTCATTGCAACAATGCAGCTCCTACAGATGGTATTCTAGTATATAGTGCCCTCTATTGAGGCATGTGGAAGAATATCTGTGTCTTTGAATGGCAGTACAGGGAATAGAGACAAAGCTCTTCAAAATCAGATTTTATTCACTGGGCCTTATTCACCATCATGTGTAAGTGTGTTCATAAATTTAACACCTGCCTTTTCAAGATTTCAAGGCAAAGCAACTCCCAAAACCTGTATTGTTTGGTTAATCCTTTCAGACAGGAAAGAGTTCTGCAGCCTTTACATTTTCTGGATGCATGGGGTTATACTTCTGATGTATATTCAGTGTAGTGAACTTACTGTAGGATTCAAGATATAGCATGGACTCAAAGCCTTATTTAACAGTCATTTTATTATGTTGAACAATACAATGCCATTGAAAGATAGTATAATTACATATGCTCTGTAGTTGCTGCACGTGAAGTGAATATTATGGCATTTAATGTCATATTCCAATACATCtctatacatacagtacatctACAGTTGCATAGTCAGTTTGCGGTGGTTCCCAGAGAAAATGTCGAGATTTATGAGGAATTTCCAAACATATATCTTTAATACTTAACCTGAATGGCTCCCATTTTATCTTGGATATGTTCAGTATATTTTATGTAGCTGGGCAAACATGGCAGGGGAAGGCTTGTAGAGtttaccacattttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69343 lncRNA downstream 203802 29458615 ~ 29458827 (-) True G55488
TU69242 lncRNA downstream 605388 29055713 ~ 29057241 (-) True G55404
TU69188 lncRNA downstream 768746 28843473 ~ 28893883 (-) True G55359
TU69150 lncRNA downstream 906996 28755298 ~ 28755633 (-) True G55333
TU69139 lncRNA downstream 934659 28721540 ~ 28727970 (-) True G55326
TU69429 lncRNA upstream 54598 29759527 ~ 29762165 (-) True G55551
TU69510 lncRNA upstream 270700 29975629 ~ 29976269 (-) True G55610
TU69515 lncRNA upstream 284970 29989899 ~ 29990810 (-) False AMCG00009235
TU69564 lncRNA upstream 531230 30236159 ~ 30236395 (-) True G55648
TU69634 lncRNA upstream 775850 30480779 ~ 30483373 (-) True G55703
AMCG00009228 mRNA downstream 20717 29636991 ~ 29641912 (-) True AMCG00009228
AMCG00009230 mRNA downstream 74775 29573069 ~ 29587854 (-) True AMCG00009230
AMCG00009217 mRNA downstream 465486 29187536 ~ 29197143 (-) True AMCG00009217
AMCG00009216 mRNA downstream 490838 29163273 ~ 29171791 (-) True AMCG00009216
AMCG00009210 mRNA downstream 527478 29120415 ~ 29135151 (-) True AMCG00009210
AMCG00009232 mRNA upstream 404 29705333 ~ 29705803 (-) True AMCG00009232
AMCG00009234 mRNA upstream 203680 29908609 ~ 29927458 (-) True AMCG00009234
AMCG00009233 mRNA upstream 225177 29930106 ~ 29955770 (-) True AMCG00009233
AMCG00009235 mRNA upstream 273008 29977937 ~ 29990676 (-) True AMCG00009235
AMCG00009236 mRNA upstream 286647 29991576 ~ 29998483 (-) True AMCG00009236
TU69243 other downstream 599599 29058284 ~ 29063030 (-) False AMCG00009215
TU68783 other downstream 2044540 27613598 ~ 27618089 (-) True AMCG00009165
TU68523 other downstream 2865975 26793541 ~ 26796654 (-) True G54821
TU68195 other downstream 4486251 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 4506291 25153266 ~ 25156338 (-) True G54544
TU69579 other upstream 544942 30249871 ~ 30254483 (-) True AMCG00009241
TU69693 other upstream 897650 30602579 ~ 30657612 (-) False AMCG00009265
TU69850 other upstream 1229635 30934564 ~ 30937251 (-) True G55878
TU69860 other upstream 1239438 30944367 ~ 30947211 (-) True G55881
TU69861 other upstream 1268024 30972953 ~ 30985995 (-) True AMCG00009269

Expression Profile