Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00009231 |
| length | 813 |
| RNA type | mRNA |
| GC content | 0.59 |
| exon number | 4 |
| gene id | AMCG00009231 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 29858925 ~ 29860369 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0021794 | thalamus development | biological_process |
| GO:0007219 | Notch signaling pathway | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0001757 | somite specification | biological_process |
| GO:0045664 | regulation of neuron differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| K06054 | HES1; hairy and enhancer of split 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU69374 | lncRNA | upstream | 216989 | 29641489 ~ 29641936 (+) | True | G55512 |
| TU69342 | lncRNA | upstream | 400182 | 29458421 ~ 29458743 (+) | True | G55487 |
| TU69312 | lncRNA | upstream | 670970 | 29186694 ~ 29187955 (+) | True | G55463 |
| TU69310 | lncRNA | upstream | 673741 | 29184921 ~ 29185184 (+) | True | G55461 |
| TU69229 | lncRNA | upstream | 827447 | 29029318 ~ 29031478 (+) | True | G55394 |
| TU69444 | lncRNA | downstream | 69406 | 29929775 ~ 29932152 (+) | True | G55564 |
| TU69469 | lncRNA | downstream | 115234 | 29975603 ~ 29976267 (+) | True | G55586 |
| TU69479 | lncRNA | downstream | 133253 | 29993622 ~ 29994641 (+) | True | G55595 |
| TU69480 | lncRNA | downstream | 135194 | 29995563 ~ 29995870 (+) | True | G55596 |
| TU69481 | lncRNA | downstream | 137860 | 29998229 ~ 29998486 (+) | True | G55597 |
| AMCG00009226 | mRNA | upstream | 116320 | 29717027 ~ 29742605 (+) | True | AMCG00009226 |
| AMCG00009227 | mRNA | upstream | 205588 | 29648617 ~ 29653337 (+) | True | AMCG00009227 |
| AMCG00009222 | mRNA | upstream | 285872 | 29563108 ~ 29573053 (+) | True | AMCG00009222 |
| AMCG00009223 | mRNA | upstream | 329431 | 29528879 ~ 29529494 (+) | True | AMCG00009223 |
| AMCG00009224 | mRNA | upstream | 371770 | 29484543 ~ 29487155 (+) | True | AMCG00009224 |
| AMCG00009237 | mRNA | downstream | 148433 | 30008802 ~ 30009842 (+) | True | AMCG00009237 |
| AMCG00009238 | mRNA | downstream | 326531 | 30186900 ~ 30208729 (+) | True | AMCG00009238 |
| AMCG00009239 | mRNA | downstream | 358500 | 30218869 ~ 30223477 (+) | True | AMCG00009239 |
| AMCG00009250 | mRNA | downstream | 404884 | 30265253 ~ 30298128 (+) | True | AMCG00009250 |
| AMCG00009246 | mRNA | downstream | 452425 | 30312794 ~ 30327528 (+) | True | AMCG00009246 |
| TU69299 | other | upstream | 684225 | 29173139 ~ 29174700 (+) | True | AMCG00009220 |
| TU69266 | other | upstream | 752017 | 29103640 ~ 29106908 (+) | True | AMCG00009208 |
| TU69269 | other | upstream | 752017 | 29103640 ~ 29106908 (+) | False | AMCG00009208 |
| TU69199 | other | upstream | 847157 | 28928892 ~ 29011768 (+) | True | AMCG00009207 |
| TU69158 | other | upstream | 1081304 | 28766454 ~ 28777621 (+) | False | AMCG00009204 |
| TU69455 | other | downstream | 47542 | 29907911 ~ 29911564 (+) | True | G55573 |
| TU69474 | other | downstream | 134757 | 29995126 ~ 29995438 (+) | True | G55591 |
| TU70069 | other | downstream | 2301391 | 32161760 ~ 32165365 (+) | True | G56060 |
| TU70453 | other | downstream | 4140427 | 34000796 ~ 34031445 (+) | True | G56368 |
| TU70456 | other | downstream | 4155301 | 34015670 ~ 34018815 (+) | True | G56369 |
