RNA id: AMCG00009237


Basic Information

Item Value
RNA id AMCG00009237
length 1041
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00009237
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30008802 ~ 30009842 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCCTTGGAAGAAGAATAAATTCGACCTGATTGAGGAAGATAAGCAGTCGAAGCAGAAGGGTTATGCAGTCAGCCTGAACTACTCCGCGCTGACGTCCTTTGCAAAGTCCTGTCCGGAGAGCGCACTCAACAGGGTGGGGAGCATGTTTAAATCCAAgaggaaaaaagtgaaaatcacCAGCGAGGACCCCACGTACACGGTGCTGTATCTGGGAAACGCCACCACCATCCAGTCCAAGGGAGACGGGTGCACCGACGTGGCCGTGAGCAAGATCTGGACCAAAAGCGAGATGGGCAAGAACGGCACCAAGATGAAGCTCACCATCAGCTCCCAGGGCATCCGGATGGTGCATGTGGACGACAAGGCTAGGAGACCGGGACACTTGTATCTGCTGCACCGGATAACGTACTGCGTGGCTGACCCGCGGCTGCCCAAGATTTTCGCGTGGATCTACCGGCACGAAATGAAACACAAAGCTGTGATGCTGCGCTGCCACGCCGTCCTGGTGTCCAAGCCCGAGAAAGCCAAAGCCATGGCGCTCCTGCTGTACCAGACCTCGGCCACTGCCCTGGCTGAGTTCAAGAGGCTAAAGCGGAGGGACGATGCCCgacaccagcagcagcagctcatcGGGGAACAGACCATCCCCTTAGTGCCTCTCAGGAAGCTCCTGAACGGACAGTGCTACTACAAACCCCCGGTGGAGCGCAGTCGCAGCGCCCCGAAACTGGGCTCCATCACCGAGGACCtggtgggagaggaggaggaggagaaagccATGCATTTCGAGTGCGAGGACATCCTGGACACCGAGGACGACTGCCTGGGCAGTGGCAAGCAGGAGCTGTCTCAGATCATCAGTGACCTTGGGGAGATGTGCATCGGCAACGACGTGCAGACGCTGAAAGCCGACCTGCGGGTCACTCGGCTGCTGTCGGGGGAAAGCACGGGCAGCGAGTCGTCTATAGAGAGCAACCAAGAGCCCAGCTCTGTGGCAAACGGGTTGGAAGAAAGCAAGGAGCAAGAGCTGGGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69481 lncRNA upstream 10316 29998229 ~ 29998486 (+) True G55597
TU69480 lncRNA upstream 12932 29995563 ~ 29995870 (+) True G55596
TU69479 lncRNA upstream 14161 29993622 ~ 29994641 (+) True G55595
TU69469 lncRNA upstream 32535 29975603 ~ 29976267 (+) True G55586
TU69445 lncRNA upstream 76650 29858295 ~ 29932152 (+) False G55564
TU69522 lncRNA downstream 132370 30142212 ~ 30222127 (+) True G55620
TU69565 lncRNA downstream 227082 30236924 ~ 30240492 (+) True G55649
TU69568 lncRNA downstream 227082 30236924 ~ 30240492 (+) False G55649
TU69569 lncRNA downstream 229491 30239333 ~ 30242731 (+) False G55649
TU69639 lncRNA downstream 485701 30495543 ~ 30497604 (+) True G55707
AMCG00009231 mRNA upstream 148433 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009226 mRNA upstream 266197 29717027 ~ 29742605 (+) True AMCG00009226
AMCG00009227 mRNA upstream 355465 29648617 ~ 29653337 (+) True AMCG00009227
AMCG00009222 mRNA upstream 435749 29563108 ~ 29573053 (+) True AMCG00009222
AMCG00009223 mRNA upstream 479308 29528879 ~ 29529494 (+) True AMCG00009223
AMCG00009238 mRNA downstream 177058 30186900 ~ 30208729 (+) True AMCG00009238
AMCG00009239 mRNA downstream 209027 30218869 ~ 30223477 (+) True AMCG00009239
AMCG00009250 mRNA downstream 255411 30265253 ~ 30298128 (+) True AMCG00009250
AMCG00009246 mRNA downstream 302952 30312794 ~ 30327528 (+) True AMCG00009246
AMCG00009248 mRNA downstream 353210 30363052 ~ 30373668 (+) True AMCG00009248
TU69474 other upstream 13364 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 97238 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 834102 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 901894 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other upstream 901894 29103640 ~ 29106908 (+) False AMCG00009208
TU70069 other downstream 2151918 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 3990954 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 4005828 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 5379072 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 7350259 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006997 True 2431 mRNA 0.43 1 NC_007122.7 34235372 ~ 34237802 (+)