RNA id: AMCG00009238


Basic Information

Item Value
RNA id AMCG00009238
length 4423
RNA type mRNA
GC content 0.44
exon number 26
gene id AMCG00009238
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30186900 ~ 30208729 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGTTGCCAGGTGTTCTTTTCATGAGCGTCTTCCTCCGCCATGGTTGCTATCTgactgaaaacatacaaaacggGACTTGTTTCAAATATGAAACCTTCGGGATTATGTTGAGGCTAAAACCAACATCTCATGAAGCAGAAGATCTTTGACTGATCTTTTTGTAAGGTACACACCTCAACGTTTTTCCGAGTCTGCATTTGAGCAACAGGGAGTCTCTGAAGATGGGAGACATGTTGACTTATGAAGCAGAACTTCTTGGCATGGTTAAGGAGTATTTAAGGTTTGGTGAATTTGAAGAAACTGTTAAGCTTTTTGAGAAGGAATGCAAGAGCAAAGGAAAACCCATTCCCAAAACCTCCAGCAATGTCTTGAGAGACTCCAAAACCTTAATAATTCAGAAAGACTTGATAAGCTCATTTGAAGATGGAGACATGAAGGTGTTCTTTGAGCTGTGGACTGAGCACATCCCTGCACAGATCCGTGACTTCGACCTTCTTGCCCAGAAACTGGAGTTCTACTTGCACATCCATTTCGCTATTTTCCCTTTGAAAAACACCCTAAGACAGCCCGACAGAGCTGAGTTTGAGGACAGGATAACACACTATAAGCATTACCTGGAGACACGGGGAGCAGCGCTCAGTCAGACCACCGAGTTCCTGCCCTTCTACGCTCTGCCCTTTGTGCCCAGTCCTACAGTGCATCCCTCCTTCAGAGACCTCTTCCAGGTGTTTCTTTGGATTCGTGGACTCCTGACTTGAAGAAAAGGCTCGAAAGATTTCTGTCTGTGACACTAAAAGCTAGCAATACCCCAAGGCTGCTGACTTTATATAAACAGAAGGAGAGTGGGAATAAAGAGATGCACCAGCATCAGTTAGTGGATGCAGAAAGGAGAGCTGCTACCTACATGAAAAAGTTCAACAAGATGCAAGCAGATTACCACAATCTTATTGGGGTCACCGCAGAGCTCGTGGACTCTCTGGAGGCTACGGTCAGAGGCAAAATGATCACACCTGAATATCTCCAGAGCGTCTGTGTCCGTCTCTTTAGCAACCAGATGCGGGAAAGTGTGGCACAGAGCATTGATTTCACCAGGCCTGGGACTGGATATTACTCTATGAGTCCTTATGACAATGATGATGGATATGCTTCTTCAATGCTGAGAGCGTCCATTGCCCCTCCGAAGTCCAAAGATGTGCCGTTGCTGCCTTCCTTAGACTATGAGAAGCTGAAGAAAGACCTGATTTATGGGACTGACCACCTGAAGGCTCTGTTGTTGCAGGCCTTGCGCTGGagACTCACTAAGTCTCTTCCGGGAGAGCAAAGAGAGACTGTGCTGCAGGCTTATATCAGCAATGATCTTCTGGAGTTTCACAGCAATAGCCAGAAGAATGTGCTCCGGCTGCTGAATTCCAAGAACGAGGTGGTCAGACAGTACATGGCCCGACTGGTCAATGCTATGGCCTCACTGTCACAGGGTCGACAGTATTTGTCCCAGAACACCGCTCTACTGAGAGTTCTAGAGAAAACTCTGAAGGTAGAAGAGAAGGACTCTCTGACCAGGGAGAACGTGCTGGGAGCCCTACAGAAGCTCAGTCTCCGGCGTATTCTGCAGTCCGCTATGATCCAAGATGGGATTATCCCCTGGCTTATTGATGAACTTCAAGATACAGACTCCCTCTCTGACTACACTTTGGAGTACTCTGTAGCTCTGCTAATGAACCTCTGCCTCAGAGCCCAAGGCAAACGGAAGTGTGCTCAGAATGCTAATCATGTGCTGAAGGTTTTGACTGATCTCTTGGGACATGAAAACCATGAGATCCGCCCTTATGTGAACGGAGCACTATACAGCATTCTCTCTGTACCAGACGTGCGGGAAGAAGCAAGAGCCATGAGTATGGAAGACATTCTCCTTTGCTTCAGCAAAGGGGAAACCCCTGAGATTACCAGGCAGATTGAGTACATTATTAAACAGCTCAATACAGATGATGTCACGGATGATGGGCCTGAAtctgatgatgaagatgaagatgatgatgaggaAGAAGATGCAATGGAAACCGATCTGGACAAAGATGAAATTCTTCTTGCACAGCCTAGGGATCTTTCAGGAGAAGCTTTGCTGACAACGCAGTACTTGGGGttacTAACAAACACGGCGAAGTCAAAGAGGAGGTCCGCCCAGGGCACGGGTCAGAGCTTCGAGGAGCCCCTCCAGCGCCCCGTCACCCCCAGCTCCCACCGCAGCCTCTGCACACCAGATTCAAAGGCAAGCAGTGATGTGCATTACCCTCTCAGCCCACACAGAAGTGAAGCAAGCCTCACAGAGTCCCGATGCAGCTCTCGCACACTAACCCAAAGTGGGAGCAGGCCTAGCACGGCCGAGTCCCTCAGCCCCATCCTCGCTGCAGAATTCGAGGCAGGGCGCTATTCCCAGGACTCAGGAACAGATCGGCATCTTGAAGCACGTTCACCGCAGTCCCCATCAGATCAGTTTTCTCAGGAGAACGGTCAATCTGGAAATGCTGGATTCACAGCCCAATCCAAGACTCTCCGGACCCCAGAATATGTGCCCACAAGCCCCAGGAAGGCCCGAACCCCAACGCTGGCACCTCAGTTCTCCCAGTCTGGCCCCCAGCAGACCAGCAGGCCCAACTCCGCAGGCTCCTTAGGACGAAGCAGACAGAgcaGTCAGTCATACAGGAAGTGAAAAAAAACTTCTTTTGCTACACGAGTTTCTTCTCCCATGAGATTGATCCAGCTTCCTGTAACTCCGTCCACACCACTCATCAGGGTCACCGCAATAGAGACGCTATCAGGGTTGAGGTACAGAACAATACGCGGGATTGTCACGCCACAGTCCCCTTTCAGCCCCTGCAAAGAACACCTGTGTAACACGACACGCTCTGCAATAATCGCAACAAGCACTTTTTTATTCTGCTGCCGTTAGTGCTGCGGGTATGCGCTTTCGCTTTGGCGAGTCctttttgacatttttcagACCAGATAATATTTTGGTAATTACCCCCTTCCCCAGTTAGCTGTATTTGCTATAGAAAGGGGATGCAGGATCGCTATAGTAAACAAGTGGGTTCCCTTTCTACAAATTCTCTTGGTTAATAATTTGGTGGCTGctagtttaatatttaatatcttttTACTTCCCTGTTATACAATTATCGAAGCATTAAGATGTAAGTTATGATAGCATTATTTGTGAGTTTGATGTATGTTATGTGATGTTCACGCTGAAATTGAAAGCATACTCAGGTTACATAAAACTCAAACTCCGTGCATCTATGAATCAAGTGGTTCTCAAGCTATTGTAAGACTTGAATCCACATGAGTTTACTCATCAATAAGGAAATTTGGAAATGTTAATTTCCTGTATTCCTGCAATGAcgacatttcacatttctttgtACAGTGCATTACCTGGCACTGTGTTCTTGACTCTGGGATTTGACAATACCTTTGATTTTGATGTACtttagttttttggttttgttttgttttcctccccgTTGCATCTAGTCTTCACAAGACTACCAGTTttaccagctcctcctcctttaTGAAATCCCTTTTAAAATGGAGGTTTGTATATATCTGCATCatctttaataaattattaaacatgGGTACTTTATTCCTTTTAGAAATAATCATCTTTCTGCCTCGGATTCTTGTAAATAGTAAACATCACCTGTGTTCCAGagtatttgtttctatttgagttgtttgttttaaagtgatttgtaccattttaattgtatgctAAGCACAATTCTGATGTATAATAATCAAACCCTAACCTGCAGGAACTATTGCTATTGTGAGTTTTCTGTGAAAGGTCAGATCCTCTTCTATTAACCTCTTCATCTTTTGTGGTGAAAGTTTTTTGATCAGTGCTTTATTGTTGGaattgaactgcactgtatcaCAAGcccatatatttattaatgtaaagtgttgtAAAGGTGAATTAATTCATATCAATAGAGAGGAAAATATGCCGCGTTCAGACACTCTGGGATTCCTTTCATTAATGTATCCCAAATCGCAGTGTTTGCACAGACTAATATGCACATgacattaatgtgtttaatttatactTATTCTATACTTTGTTTTGTGCTCTACTTTGATAATCATAAATTGTGTACTTATTTTTGTATGGGATGTAATAAAaggtttatgtaaaatgtacacatcTTTTTCTATTAAGATATTTGATTAATGTTCTAGTATTTGcacttttcaaattatatttatttttctacataaTTTCCATGGGTGTGTAAACTTGTGTGACTAACTGTAGCATGCCTGAAATACATGATTGTTTAGACACTttaacattttgtcattttcagtGTATCTCTTATTATGAGATCTGTGAAGTAAAATGTTACCCTGTCTCA

Function

GO: NA

KEGG:

id description
K22864 ARMC9; LisH domain-containing protein ARMC9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69481 lncRNA upstream 188414 29998229 ~ 29998486 (+) True G55597
TU69480 lncRNA upstream 191030 29995563 ~ 29995870 (+) True G55596
TU69479 lncRNA upstream 192259 29993622 ~ 29994641 (+) True G55595
TU69469 lncRNA upstream 210633 29975603 ~ 29976267 (+) True G55586
TU69444 lncRNA upstream 254748 29929775 ~ 29932152 (+) True G55564
TU69565 lncRNA downstream 28195 30236924 ~ 30240492 (+) True G55649
TU69568 lncRNA downstream 28195 30236924 ~ 30240492 (+) False G55649
TU69569 lncRNA downstream 30604 30239333 ~ 30242731 (+) False G55649
TU69639 lncRNA downstream 286814 30495543 ~ 30497604 (+) True G55707
TU69678 lncRNA downstream 390745 30599474 ~ 30600234 (+) False G55745
AMCG00009237 mRNA upstream 177058 30008802 ~ 30009842 (+) True AMCG00009237
AMCG00009231 mRNA upstream 326531 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009226 mRNA upstream 444295 29717027 ~ 29742605 (+) True AMCG00009226
AMCG00009227 mRNA upstream 533563 29648617 ~ 29653337 (+) True AMCG00009227
AMCG00009222 mRNA upstream 613847 29563108 ~ 29573053 (+) True AMCG00009222
AMCG00009239 mRNA downstream 10140 30218869 ~ 30223477 (+) True AMCG00009239
AMCG00009250 mRNA downstream 56524 30265253 ~ 30298128 (+) True AMCG00009250
AMCG00009246 mRNA downstream 104065 30312794 ~ 30327528 (+) True AMCG00009246
AMCG00009248 mRNA downstream 154323 30363052 ~ 30373668 (+) True AMCG00009248
AMCG00009249 mRNA downstream 180224 30388953 ~ 30404240 (+) True AMCG00009249
TU69474 other upstream 191462 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 275336 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 1012200 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 1079992 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 1953031 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 3792067 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 3806941 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 5180185 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 7151372 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile