RNA id: AMCG00009239


Basic Information

Item Value
RNA id AMCG00009239
length 1071
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00009239
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30218869 ~ 30223477 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCCTGGTTGCTGTGGTTACATTGACGGTGGTGCAGAGGGGCAACACCAGCAGTGGGACTCAGTTTCAGGAGCAAAGCCTGACCAGGCAGGGGTCACTCACTGAAGGAACACTCCATGTGCAGAAGAAGGGCCTCCACTCCGGCACGGACAGCTTCTGGAAAGTGAATAAGCAAACTGCCACCACCGAAGAACCGAGAGTGACAGAGGACAGGCAGGGGCGTACCTGGGATGTCACCACCACCAACTGTACTGCCAACCTCAACTTCACTCACATGGAGTGGTTTGGAGGTTTGGAGGTCAATTTCAAGCAGTTCCTTCTCTACAGGCACTGCAGGTATTTCCCCATGCCCATCAACCATCCAGAGAAGTGCAGAGGAGAAATCTACCTGTTGATTGTTGTCAAGTCCATTATCACGCAGTTTGACAGGAGGGAGGTGATCAGAAAGACTTGGGGGAAGGAGTCGGAAGTTGATGGCAAAAGGATTAAGACGCTGTTCCTCCTGGGTGCCCCTTCCAAAGAGGAGGAGAAAGCCAACCACCAGAAGCTCCTTGAGTATGAAGATCACATTTACGGCGATATCTTGCAATGGGACTTCATGGACAGCTTCTTCAACCTTACCCTCAAGGAGGTGCACTTCCTGAAGTGGTTCTCTACCTACTGCGAGAATGTGCACTACATATTCAAAGGTGATGATGACGTTTTCGTTAGCGTTCAGAATGTGTTGGAGTTCCTGGATGGCAGCAAGATTAGGAACCTTTTTGTAGGAGATGTCCTCTTCAAGGCCAAACCCATTCGGAAAAAAGAGAACAAGTACTACATCCCCCAGGCATTGTACAATAAGACCCACTATCCACCCTATGCAGGTGGTGGGGGGTTTCTAATGGATGGGCCCCTGGCTAGGAAGCTCTATGCTGCTTCTGAAACCTTGGACCTAGCACTGTGGTGCCCTTTCTCTGAGGGTCAAGCAACCAAAAGCTACGTGTTCCCCACTGGGGCAACAGGCAAGGCTGGTAACACCACTCAGCAAAGGGACTACATGCCCCCAGCATTCAGCGGCCAAGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69481 lncRNA upstream 220383 29998229 ~ 29998486 (+) True G55597
TU69480 lncRNA upstream 222999 29995563 ~ 29995870 (+) True G55596
TU69479 lncRNA upstream 224228 29993622 ~ 29994641 (+) True G55595
TU69469 lncRNA upstream 242602 29975603 ~ 29976267 (+) True G55586
TU69444 lncRNA upstream 286717 29929775 ~ 29932152 (+) True G55564
TU69565 lncRNA downstream 13447 30236924 ~ 30240492 (+) True G55649
TU69568 lncRNA downstream 13447 30236924 ~ 30240492 (+) False G55649
TU69569 lncRNA downstream 15856 30239333 ~ 30242731 (+) False G55649
TU69639 lncRNA downstream 272066 30495543 ~ 30497604 (+) True G55707
TU69678 lncRNA downstream 375997 30599474 ~ 30600234 (+) False G55745
AMCG00009238 mRNA upstream 10140 30186900 ~ 30208729 (+) True AMCG00009238
AMCG00009237 mRNA upstream 209027 30008802 ~ 30009842 (+) True AMCG00009237
AMCG00009231 mRNA upstream 358500 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009226 mRNA upstream 476264 29717027 ~ 29742605 (+) True AMCG00009226
AMCG00009227 mRNA upstream 565532 29648617 ~ 29653337 (+) True AMCG00009227
AMCG00009250 mRNA downstream 41776 30265253 ~ 30298128 (+) True AMCG00009250
AMCG00009246 mRNA downstream 89317 30312794 ~ 30327528 (+) True AMCG00009246
AMCG00009248 mRNA downstream 139575 30363052 ~ 30373668 (+) True AMCG00009248
AMCG00009249 mRNA downstream 165476 30388953 ~ 30404240 (+) True AMCG00009249
AMCG00009245 mRNA downstream 184393 30407870 ~ 30421424 (+) True AMCG00009245
TU69474 other upstream 223431 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 307305 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 1044169 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 1111961 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 1938283 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 3777319 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 3792193 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 5165437 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 7136624 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040770 True 2258 mRNA 0.43 2 NC_007133.7 36656698 ~ 36661461 (+)