RNA id: AMCG00009241


Basic Information

Item Value
RNA id AMCG00009241
length 793
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00009241
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30249871 ~ 30256499 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCTTGCATGCCTGTCAGAGCCTCAGCACACAAACCACACGCTGCGCAAAGCGTATCCCGCTGTACTGGAAGAAGCCTTTGCACAGTCGCTTAGGAGTTTGTTAGGTGAAGAACTATCCGAATACCTTGCATCGGGGGAGCAAGAAGGAAAACTTGAAAACGTGAGGTCAAGAGTGCGTCTCCTTAGAGACCTGCGTCTGGACACGAGAGCGAAGGCGGTCTGGGCCCGGATCCTGAACGACCAGCCCAGTTCACGAAGATACAAAGGCGGGGTGAAGAAAGGGGGCTCCAGAGGCTGCTTCGGCCACAAGATTGACAGAATAGGGGCTGTAAGCGGCCTTGGCTGTTAAAGACGCAGCACAGAATGGTGTGATTAATTGGACGATGGGTTTGGACAACTTTGTGTTAGTTGCTCTTCACCTGAGGAAAACAGAAAGTACCATCCTTATTCAAGAAACTGATTGGTTCGAATTTCGGTACGAAGAACCAGCGTTACTGAAGAATACAACAAcaagattataaaaaaatgcatacaaataaacacactacACAATGGCGGACAATGATGTAGAAACTAAAACTGCAAAGCTGTATATTGTCGCTGCTGTACATTCATGTACTTCATTCCtgcataaatgtatttatgtttaaaaaaactatttatatgtttataaaagagatatttataaatatgagttttatttatgtaacatttttgaaattgatgcaacTGCAGGTCAAATatgtttgtaacttttttttttgtcttaaataGCTGtaaatgttaag

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69564 lncRNA downstream 13659 30236159 ~ 30236395 (-) True G55648
TU69515 lncRNA downstream 259244 29989899 ~ 29990810 (-) False AMCG00009235
TU69510 lncRNA downstream 273785 29975629 ~ 29976269 (-) True G55610
TU69429 lncRNA downstream 487889 29759527 ~ 29762165 (-) True G55551
TU69343 lncRNA downstream 791227 29458615 ~ 29458827 (-) True G55488
TU69634 lncRNA upstream 224280 30480779 ~ 30483373 (-) True G55703
TU69654 lncRNA upstream 234739 30491238 ~ 30491980 (-) True G55722
TU69697 lncRNA upstream 396413 30652912 ~ 30655021 (-) True G55760
TU69824 lncRNA upstream 553077 30809576 ~ 30816091 (-) True G55861
TU69967 lncRNA upstream 1658669 31915168 ~ 31915373 (-) True G55975
AMCG00009240 mRNA downstream 5558 30236908 ~ 30244496 (-) True AMCG00009240
AMCG00009244 mRNA downstream 64403 30181081 ~ 30185651 (-) True AMCG00009244
AMCG00009243 mRNA downstream 78524 30162420 ~ 30171530 (-) True AMCG00009243
AMCG00009242 mRNA downstream 111740 30129788 ~ 30138314 (-) True AMCG00009242
AMCG00009236 mRNA downstream 251571 29991576 ~ 29998483 (-) True AMCG00009236
AMCG00009255 mRNA upstream 237161 30493660 ~ 30515776 (-) True AMCG00009255
AMCG00009254 mRNA upstream 280351 30536850 ~ 30542295 (-) True AMCG00009254
AMCG00009253 mRNA upstream 287654 30544153 ~ 30547821 (-) True AMCG00009253
AMCG00009262 mRNA upstream 305249 30561748 ~ 30567694 (-) True AMCG00009262
AMCG00009265 mRNA upstream 342975 30599474 ~ 30602845 (-) True AMCG00009265
TU69394 other downstream 579717 29660960 ~ 29670337 (-) True AMCG00009229
TU69243 other downstream 1187024 29058284 ~ 29063030 (-) False AMCG00009215
TU68783 other downstream 2631965 27613598 ~ 27618089 (-) True AMCG00009165
TU68523 other downstream 3453400 26793541 ~ 26796654 (-) True G54821
TU68195 other downstream 5073676 25173677 ~ 25176378 (-) True AMCG00009100
TU69693 other upstream 346080 30602579 ~ 30657612 (-) False AMCG00009265
TU69850 other upstream 678065 30934564 ~ 30937251 (-) True G55878
TU69860 other upstream 687868 30944367 ~ 30947211 (-) True G55881
TU69861 other upstream 716454 30972953 ~ 30985995 (-) True AMCG00009269
TU69876 other upstream 908512 31165011 ~ 31184966 (-) True AMCG00009275

Expression Profile