RNA id: AMCG00009250


Basic Information

Item Value
RNA id AMCG00009250
length 1611
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00009250
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30265253 ~ 30298128 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAACATCATAGGCAGGGCAGAGGGATTAACCAGTCTGGAGAGGGCAGGCGAGTGCAGAATGCCCCCCAGAAAGATGCCTATTCCAGGCTCCTTAATCAGCATCACAGCAGCAAGTTTCGCTCTTTCCTGAACCAGtttgcacagcaacagcagctggAAATGGATGAGAACGGGGGAAATCTGGCTGGTGATACCAGTCTGGAGAGGCAGGATACTCCTCCAAGGAAGAGGGAAGATGACATGAAAGGAGGCCTCTGCACGAATGGATATTCACCTTCCGCCACTAAGGGAGCTGAAGCGGAGAGCTGTCTGTCCTTATACATGGAGAAGCTGAGCGAGCGCGGAGACTCTGTGGAGACCTTGAAGGTCGCGCAAGGGATGGCAGCTCGGCAGCGCCATGGCAAAAGGAGGGACACCAACACCAGCCAGGATGGAGACGTTGAGTCTGGTGGTGAGGGGACCTTGAGACAGGTGAACTCCAACCAGCAGAAGCATCATCACAGCGATATtctgtcttcagtgccctgcACGGCAGTTCTTGTGGGAGGCTTGGACAAGGATATGCTCCTGAGCTCAAGACAAGAGTTTTCTGCTGCAGTGCACAGCAGTAGCCCTGGCTCTGGGCTTGAACAGCAGCAGgacaagaaaaagaaatcaaagaagaaaaatgtgacCAAAGGCAATGCAGGTGGCAACCAAGAGGGATCGGGATTCAAAGATTGCGATGGGACAACTGTCAATAAAGGACACATTGATATGGGAACTATTGGGCAGTCCCCAGGCACAATGTGTAGTCCAAATATGACTCCCTCTGATAAAGGTAAAAATAAGCACAAACCAGGCAGAGGCAAGAAGAAACAAGTGTTTGAAACCTACATGGATGCACAGGATGTTTCTGCAGGGTTAAAGAGACAAGAACTCATTCAGGGCTCCTTAAGAATCAACCCTAAAAAGTACCATGAAGCCTTCATTCCTTCTCCTGAAGGGACACGGGACATATTTATCGATGGGATTGTGTCTCGCAACAGAGCTCTGAATGGGGATGTGGTGGTGGTGAAAATCCTCCCGCGGGACCAGTGGAAGGTGATAAAGCCAGACAATGATGTGGAGGAGGTGAGCGAGCCCGAAGTTCCAGATGATCCCACTGGCCAGCGTGAGTGCAGCCCTGATGTCATCGTGGAGGCGCAGTTTGAGGCTGAGCGAGATGGCCAGCAATCGGCCTCTGATTTGCTCATCAACAGGATGGAAAGTGTGAACCTAAGTGTTGCAGGCACCACTTCTCTGAAAAACAGTGAAACCCCAGGTTCAAAGCAAGATAAGATCGGCAGTTTAGCTGACCCTCAAACTCTTGCTGATAAGTTTCTTCAAAGGACTGGAAAGGTGGTGTACATTGTGGAAAAGAAGCATTCTCGTGCAGTGACAGGCTTCATTAAGCACTTGCCAGAGAAAGACTTTGCCATGTTCTCCCCTGTGGACCACAGGGTCCCACGGGTGAATGTGCCACTGGCCGACTGCCCTCAAGACTTTACGACACGCCCTGCCGACTTCGCCAACATCCTCTTCATCTGCCGGATTACTAACTGGCATGACGACAGCAACTTTGCTGAA

Function

GO:

id name namespace
GO:0044427 obsolete chromosomal part cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69569 lncRNA upstream 22522 30239333 ~ 30242731 (+) False G55649
TU69565 lncRNA upstream 24761 30236924 ~ 30240492 (+) True G55649
TU69568 lncRNA upstream 24761 30236924 ~ 30240492 (+) False G55649
TU69522 lncRNA upstream 43126 30142212 ~ 30222127 (+) True G55620
TU69481 lncRNA upstream 266767 29998229 ~ 29998486 (+) True G55597
TU69639 lncRNA downstream 197415 30495543 ~ 30497604 (+) True G55707
TU69678 lncRNA downstream 301346 30599474 ~ 30600234 (+) False G55745
TU69680 lncRNA downstream 301804 30599932 ~ 30602032 (+) True G55745
TU69754 lncRNA downstream 649238 30947366 ~ 30950209 (+) True G55800
TU69761 lncRNA downstream 857390 31155518 ~ 31163151 (+) True G55807
AMCG00009239 mRNA upstream 41776 30218869 ~ 30223477 (+) True AMCG00009239
AMCG00009238 mRNA upstream 56524 30186900 ~ 30208729 (+) True AMCG00009238
AMCG00009237 mRNA upstream 255411 30008802 ~ 30009842 (+) True AMCG00009237
AMCG00009231 mRNA upstream 404884 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009226 mRNA upstream 522648 29717027 ~ 29742605 (+) True AMCG00009226
AMCG00009246 mRNA downstream 14666 30312794 ~ 30327528 (+) True AMCG00009246
AMCG00009248 mRNA downstream 64924 30363052 ~ 30373668 (+) True AMCG00009248
AMCG00009249 mRNA downstream 90825 30388953 ~ 30404240 (+) True AMCG00009249
AMCG00009245 mRNA downstream 109742 30407870 ~ 30421424 (+) True AMCG00009245
AMCG00009247 mRNA downstream 148548 30446676 ~ 30483381 (+) True AMCG00009247
TU69474 other upstream 269815 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 353689 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 1090553 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 1158345 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 1863632 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 3702668 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 3717542 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 5090786 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 7061973 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile