RNA id: AMCG00009258


Basic Information

Item Value
RNA id AMCG00009258
length 1872
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00009258
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30944371 ~ 30947285 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACAATAATGTGAAAATACGCGcatataaatcataattaatcCAAAATTAATATTGGCAGATCACTGGCCGTTTAAGTCCTCAGGGCCATAGTGTTTATTCGTAGCAACGTTAAGCGTGTTCAGAGACGGTTAACCAGCCAAGAAAAAAGATGAGATGAAGTAGACGGAAATCCGTAACAAAACCAATGTCGTCCGTGGCTACGCAGGTTGGAGTGAGGTTCAACCCCCCAGCCATCGTCTTAATTTATGAGAACGAAGCGACGAAAAAGACGAGGAAGCGTGTGATGCCTGTGCGGAACTTCTCCAAGTTTTCAGACTGCAGCAAGGCGGCAGAGCGCCTGAAGAACACTGTGCGGCACAGCGCCTACCTGCAGTCTGTGTCCATGAAGCAGCTCGAGAGGCTCCATGTGATCTTGCGAGACAGACTGCTGGGCCGCAGCCTGGAGCAGAGCCTGGCCTCCCTGGACCTGGACCCCAACGAGGACCTGAACAAGCTCAGTGACGAGGAGCTGGCCCGGAAGAAGGCCAAGATGGACGAGCTCTTTGAACGGAACCGCAAAAAGAAGGATGATCCTGATTTCATGTATGACATAGAGGTGGAGTTCCCTGTGGAGGACTGTGCAGAGTCCTGCAGCTGGGATGATGACGACTCAGAGAAGCTATAGACCTTAAAGGAGGGGGCTGAAGACTCGGTGGACAGCGATCCCAACAGGTACATTGCTAATAATGTTAATTCATTGAACCAATTATTTGGTGAAATTAGATTAACTGATCAATGATACCTATAAAACCTGAAGGATTGGTGCTCCTAACTGGGACCAGGAGATGGTGATAGAAGAACAGACGTGTTGGGAGACTGCATTTACAAGTAACTGAATTTCAAATTATCATTGAAATATATTGCAAGATGTACAAGTCCATTAAGTTTAATCAATTTTGCACAAAACTGGACAATCTTGTTTGGAAcacaaaaaaactttttttccccctgcagcttcattaaaacagtattttattaccACAGGTCATGACTTTGGCTTTGCATTACTTCTACGACAACGGATCACAGACTTTGTATGGTATCCTTTTGTAAGTTTGTCTTTCGTGTTCATGTTTTGCCTAGTTATGTGTAGCTCGGAGAACTGTTTCAACGTCTGTAGTTTAGGCTTGAGAtgagctagggttttgttttggaatttgtgtattttgagcATGGTGCACTGTAtataagaaatgcatttatttgcacCATAACCTGCCTTTGTGTCTCCCAAGTCCATGCCTGAGATCCCCAATATCGGGTCCAACCCACCAAAGTTGATATATATACCACgatatattgtacatataaaattaatatattgttaaaattgttaatttgtaCCCTGTAAAAGATTGCACAATCATTGTACATTATCTTTTGTGCTCATTTGTAAGTGGCTAATATAAGCTCACTAGCATTGGCTAATGATGTTTCAGCATTAAAACCTACTTCAGAGAGGTGTTTTGAGTATTTGAGTTGTAATGTATTCTGCATCCAACAGTGAATTGAATCACTAACAAATGTTACCATGATGGCCAGATTTTCTACATTACACCCATCTCAAGTCCTGTCACTTTTGATACATGATACAGTAACCTTAGAAAGCAtacatttgtctttgatttgattCAGAaccattttacttattttgatgTAGACTTTGCATTTTGTGATAGTCTTTGCTTTTTCTGCTGATGTGGTATGTTTCAGTAATGTGTATTCAAATACCTTTATGAAAAGACTAGTAAAAAAACAGTCCGCATTATCTATTGTATCGCTATcctactcccccccccccccccccccctcaaggCTGGCATTGTTGtg

Function

GO: NA

KEGG:

id description
K16801 CEP19; centrosomal protein CEP19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69680 lncRNA upstream 342339 30599932 ~ 30602032 (+) True G55745
TU69678 lncRNA upstream 344137 30599474 ~ 30600234 (+) False G55745
TU69639 lncRNA upstream 446767 30495543 ~ 30497604 (+) True G55707
TU69569 lncRNA upstream 701640 30239333 ~ 30242731 (+) False G55649
TU69568 lncRNA upstream 703879 30236924 ~ 30240492 (+) False G55649
TU69754 lncRNA downstream 81 30947366 ~ 30950209 (+) True G55800
TU69761 lncRNA downstream 208233 31155518 ~ 31163151 (+) True G55807
TU69914 lncRNA downstream 595336 31542621 ~ 31547232 (+) True G55926
TU69917 lncRNA downstream 601246 31548531 ~ 31552162 (+) True G55929
TU70028 lncRNA downstream 1106502 32053787 ~ 32057482 (+) True G56021
AMCG00009259 mRNA upstream 8453 30928174 ~ 30935918 (+) True AMCG00009259
AMCG00009260 mRNA upstream 67339 30865491 ~ 30877032 (+) True AMCG00009260
AMCG00009264 mRNA upstream 97883 30838893 ~ 30846488 (+) True AMCG00009264
AMCG00009256 mRNA upstream 169881 30642206 ~ 30774490 (+) True AMCG00009256
AMCG00009257 mRNA upstream 302230 30616894 ~ 30642141 (+) True AMCG00009257
AMCG00009273 mRNA downstream 183865 31131150 ~ 31136570 (+) True AMCG00009273
AMCG00009277 mRNA downstream 407832 31355117 ~ 31370777 (+) True AMCG00009277
AMCG00009278 mRNA downstream 447594 31394879 ~ 31412124 (+) True AMCG00009278
AMCG00009276 mRNA downstream 472555 31419840 ~ 31424011 (+) True AMCG00009276
AMCG00009281 mRNA downstream 645763 31593048 ~ 31604365 (+) True AMCG00009281
TU69474 other upstream 948933 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 1032807 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 1769671 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 1837463 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 1214475 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 3053511 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 3068385 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 4441629 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 6412816 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile