RNA id: AMCG00009264


Basic Information

Item Value
RNA id AMCG00009264
length 1551
RNA type mRNA
GC content 0.39
exon number 2
gene id AMCG00009264
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30838893 ~ 30846488 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAATTCAAGTTTCGACTGTATTCTTTCAATATCACCTGAGGTGAAAATGTTACACAAGGTGGTTTACATCCCCATTTTCATTCTGGGACTGCTGTTAAATGTcacagccctgtgtgtgttttgctgtaGGAGATCCAACTGGACATCTACCTTGATCTACATGACCAACTTGGCGATGGCTGACTGTATCGTTGTCCTTTCTCTCCCATTTAAGATCTATAACGTTTTTGAGGATTTGGAACTAAAAGTTTTTTGCCCATTTTTGGTGTCCATCtactttataaacatttatgCAAGCATTTTTACCATTACTGCCATAAGCATTCACCGATATATAGCAATTACTTATCCTTTTCATGCCAAAGCTACAGAATCACCCAAGAGGGCAATAGCAGTATGCATTCTAATATGGGTGACTGTAATAACAGTGAACGTCATATTTTCTAAGGAGCAGGATTGGggtggtaaaaataaatgtttcgaAAGGACAGTTGCTGAACCATATTCATATTCGTTcatcctggttttagaaataatggggtttctcctaccactatGTACAGTGGCGTTCTGTTCAACTCAAATAATCTGTACTTTGTCAAAAGACAAGATCAGCCGAACCCAAGAGTACAAAAAGAGAAGCATTCTTATCATCACAGCAAATATGGTGATCTTTTTCATCTGCTTCACTCCAATCCATGCTGGATTTTTACTCAAGTTCTTAGTTGCCAAATATGAACAGAACTGCAATCTACTTAATGCAATGCACAACTTCTTCCATGTTTCTGAATGCATCGCTTCTACTAATTGCTGTTTAGATGCCATAGGCTATTACATTATGTATTCCTACCAACACCCATGGAACATGTCAGAGGATTCCTGCTATTTCTTGACCTCCATTTACTATGTAAATATGTACGTGAGCATCCAGACAGCCACAGCTATAAGTGTAGTTCGGTATGTAGCAATAAAATATCCTTTCAAAGCACAATGGGTCATGTCCCCATGGAAAGCATTAgctgtgtgcattttaatatgggTGCTTAACTGCACATTGAGTTTTGTGAATTATAAAGCTGgcaatgaaataaagaaaaatgaatccCACGAAGTCAAGTGCTTCCAAAAGAGCAATACAAATCCACTACCACTCTCCTTTATCCTAACAATAGAGATATTGGGCTTCTTTGTGCCCCTGATACTGATCACTTTTAGTTCAGCTCAAATTATCTACACATTGCGAGAGCAGAGAAAAATAAGCTCCCCGAATGAGAAGTCGCAATGCATTCGCATCATAACAgcaaacttaattatttttgtaatctgCTTCGCCCCCATCCACGTGGGCTTTCTGATTAAGTTTTTAGTTGAGACTTACCCCCCTATCAACTGCAGCCTTCTGAATGGAGTACACACTTTTGTTCACATTGCCTCTACCATTTCCAACACAAACTGTTGCCTTGATGCTTTTTGTTATTACTTTGTGGTTCAAGATTTCTGGAAACGCACTCCTACTCCTGGTTCTGTATGCAAGAAAAATGAAGCC

Function

GO: NA

KEGG:

id description
K04276 CXCR8, GPR35; C-X-C chemokine receptor type 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69680 lncRNA upstream 236861 30599932 ~ 30602032 (+) True G55745
TU69678 lncRNA upstream 238659 30599474 ~ 30600234 (+) False G55745
TU69639 lncRNA upstream 341289 30495543 ~ 30497604 (+) True G55707
TU69569 lncRNA upstream 596162 30239333 ~ 30242731 (+) False G55649
TU69568 lncRNA upstream 598401 30236924 ~ 30240492 (+) False G55649
TU69754 lncRNA downstream 100878 30947366 ~ 30950209 (+) True G55800
TU69761 lncRNA downstream 309030 31155518 ~ 31163151 (+) True G55807
TU69914 lncRNA downstream 696133 31542621 ~ 31547232 (+) True G55926
TU69917 lncRNA downstream 702043 31548531 ~ 31552162 (+) True G55929
TU70028 lncRNA downstream 1207299 32053787 ~ 32057482 (+) True G56021
AMCG00009256 mRNA upstream 64403 30642206 ~ 30774490 (+) True AMCG00009256
AMCG00009257 mRNA upstream 196752 30616894 ~ 30642141 (+) True AMCG00009257
AMCG00009252 mRNA upstream 280601 30552556 ~ 30558292 (+) True AMCG00009252
AMCG00009251 mRNA upstream 308401 30517226 ~ 30530492 (+) True AMCG00009251
AMCG00009247 mRNA upstream 355512 30446676 ~ 30483381 (+) True AMCG00009247
AMCG00009260 mRNA downstream 19003 30865491 ~ 30877032 (+) True AMCG00009260
AMCG00009259 mRNA downstream 81686 30928174 ~ 30935918 (+) True AMCG00009259
AMCG00009258 mRNA downstream 97883 30944371 ~ 30947285 (+) True AMCG00009258
AMCG00009273 mRNA downstream 284662 31131150 ~ 31136570 (+) True AMCG00009273
AMCG00009277 mRNA downstream 508629 31355117 ~ 31370777 (+) True AMCG00009277
TU69474 other upstream 843455 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 927329 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 1664193 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 1731985 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 1315272 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 3154308 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 3169182 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 4542426 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 6513613 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile