RNA id: AMCG00009272


Basic Information

Item Value
RNA id AMCG00009272
length 495
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00009272
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31066530 ~ 31067024 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCGGCCTTTCAGACCCCCTCCGACACATTTTCAACCTGGGAAATCTCTTTTCGGCGGAGATGGATATGGTTATCTCTCTCCTCCCAAGTACCTGCAGTCCAGTTTTATGAATAACTCCTGGTCGCTTGGCCAGCCGCCCACTCCAATGCCTTACACGTCGTGCCAGATGGCAAGTGGCAACGTCAGCCCGGTCAATGTGAAAGGACTATCAGCCCCCTCCTCTTATAATCCTTACTCCCGAGTCCAAGGCATGACTTTACCTAGCATGGTGAACTCATACAACGGGATGAGCCATCATCACCACCCACACGCCCACCATCCACAGCAACTAAGCCCGGCCACTCCGGCACCGCCACCGGCATCCTCCACCAACGGAGCGGGCCTCCAGTTCGCCTGCTCCCGGCAGCCCAGCGAGCTCTCCATGATGCACTGTTCCTACTGGGACCACGACAGCAAGCACTCCGCATTGCACACAAGAATAGACATTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69824 lncRNA downstream 250439 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 411509 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 574550 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 583157 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 830135 30236159 ~ 30236395 (-) True G55648
TU69967 lncRNA upstream 848144 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 883398 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 931053 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 1733511 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 1777071 32844095 ~ 32844336 (-) True G56185
AMCG00009271 mRNA downstream 46722 30987124 ~ 31019808 (-) True AMCG00009271
AMCG00009269 mRNA downstream 84623 30973122 ~ 30981907 (-) False AMCG00009269
AMCG00009270 mRNA downstream 95672 30947298 ~ 30970858 (-) True AMCG00009270
AMCG00009263 mRNA downstream 148908 30906868 ~ 30917622 (-) True AMCG00009263
AMCG00009261 mRNA downstream 160766 30895975 ~ 30905764 (-) True AMCG00009261
AMCG00009274 mRNA upstream 69545 31136569 ~ 31148800 (-) True AMCG00009274
AMCG00009275 mRNA upstream 83888 31150912 ~ 31184964 (-) False AMCG00009275
AMCG00009280 mRNA upstream 406729 31473753 ~ 31477141 (-) True AMCG00009280
AMCG00009279 mRNA upstream 475638 31542662 ~ 31563060 (-) True AMCG00009279
AMCG00009282 mRNA upstream 719745 31786769 ~ 31809463 (-) True AMCG00009282
TU69861 other downstream 80535 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 119319 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 129279 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 408918 30602579 ~ 30657612 (-) False AMCG00009265
TU69579 other downstream 812047 30249871 ~ 30254483 (-) True AMCG00009241
TU69876 other upstream 97987 31165011 ~ 31184966 (-) True AMCG00009275
TU70548 other upstream 3160250 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 3172460 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 4471863 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 4471863 35538887 ~ 35539810 (-) True G56546

Expression Profile