RNA id: AMCG00009273



Basic Information


Item Value
RNA id AMCG00009273
length 1158
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00009273
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31131150 ~ 31136570 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCGCCTTCCCATAATTCACTTGCTAAGGTTAAGGGGCGGGGCTTGAGGTTGAACTCTGTGGAAACATGGCTGCCTTCAGCGTAGCAAGGTGTCTGTTCAAATATTCCTCCCAGCTATCAAATGTGGACAAGAAATCGCATATATTGCACAAATGTGCGAGAAGAATGCTGTGCAGTGCGTCGTCGGGAGGATCTTCAGATGGAAGGAAGCCACAGTTCTCAGATGAAGAAGTTCAAAATATTCTGACCAATATCACTGGTCTGGACCTGCAGAAGATATTCCGACCTATTAAACAGGAGCTAAAGCCACCAACATACAAACTCATGACAGATCAACAGCTGGAAGAGGAGCGCTTTATTGTTGTCCGGGAACCAGATGGGAAGTTACGCAAAGCTTCTTGGGTAGAACGGGATCGGATTTTGCAGATATACTTCCCTAAGGAGGGCAGGAGACTCACACCACCACCAGtctttaaagaagaaaacatgaagGTTGTATTTCTGCAAGACCGACATGAAGACATCCTTGACCTCTGCCTTGTCCAGTTTGAGCCAGATTCCTCTGAGTACATAAAAgTACATCAGCTAACATATGAGGATATTGACAAACAGGGAAAGTATGACCTTCTGCGCTCAACCAGACACTTCGCGGGAATGGTTTGGCACTTGGTCAACGTGAAAAGAATCGACGGCTTATTGATTGATATGATCCAGAGAGACCTGATACAAGATGCTGCCAGCCTGGTTCATTTGTATCATATGTTGTATCCACAATGTCCGTCAGCTATTGAGGCAAAGGAGCAGCAAGCCAGTGGAATTGAGCTGCTTAAGATTTTTGCCAAGAAAGAATCCCAGAAGACTGGTTACATTGAACTTGCTCTCGAAGCCTACCAGGAGACCACTCTCGAAAGCTCTGCATAATGATCGCTAGCGAGACATTTCTGACTTCAGCTCATCTCGCACGAGGAGGAGGCTTCTTACCTGACCTGGTCTCATGTACCGGTCTGATCACGTTGCTTTAGCGCAGCAGCCAgtgctgtactgcagtgtaattttcattctttatattaaagtatcattaaaaaaaacccaTGCTGATtactttcatttccttttcaaaataaaccattcaGAAAAGAAACATATGAACAAGAGATG

Function


GO: NA

KEGG:

id description
K17401 MRPS22; small subunit ribosomal protein S22

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69754 lncRNA upstream 180941 30947366 ~ 30950209 (+) True G55800
TU69680 lncRNA upstream 529118 30599932 ~ 30602032 (+) True G55745
TU69678 lncRNA upstream 530916 30599474 ~ 30600234 (+) False G55745
TU69639 lncRNA upstream 633546 30495543 ~ 30497604 (+) True G55707
TU69569 lncRNA upstream 888419 30239333 ~ 30242731 (+) False G55649
TU69761 lncRNA downstream 18948 31155518 ~ 31163151 (+) True G55807
TU69914 lncRNA downstream 406051 31542621 ~ 31547232 (+) True G55926
TU69917 lncRNA downstream 411961 31548531 ~ 31552162 (+) True G55929
TU70028 lncRNA downstream 917217 32053787 ~ 32057482 (+) True G56021
TU70072 lncRNA downstream 1030295 32166865 ~ 32168048 (+) True G56062
AMCG00009258 mRNA upstream 183865 30944371 ~ 30947285 (+) True AMCG00009258
AMCG00009259 mRNA upstream 195232 30928174 ~ 30935918 (+) True AMCG00009259
AMCG00009260 mRNA upstream 254118 30865491 ~ 30877032 (+) True AMCG00009260
AMCG00009264 mRNA upstream 284662 30838893 ~ 30846488 (+) True AMCG00009264
AMCG00009256 mRNA upstream 356660 30642206 ~ 30774490 (+) True AMCG00009256
AMCG00009277 mRNA downstream 218547 31355117 ~ 31370777 (+) True AMCG00009277
AMCG00009278 mRNA downstream 258309 31394879 ~ 31412124 (+) True AMCG00009278
AMCG00009276 mRNA downstream 283270 31419840 ~ 31424011 (+) True AMCG00009276
AMCG00009281 mRNA downstream 456478 31593048 ~ 31604365 (+) True AMCG00009281
AMCG00009283 mRNA downstream 784117 31920687 ~ 31940691 (+) True AMCG00009283
TU69474 other upstream 1135712 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 1219586 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 1956450 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 2024242 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 1025190 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 2864226 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 2879100 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 4252344 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 6223531 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile