RNA id: TU69876


Basic Information

Item Value
RNA id TU69876
length 3426
RNA type TUCP
GC content 0.40
exon number 5
gene id AMCG00009275
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31150912 ~ 31184966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGGGAGCATTGATAGTGTTGCACACGGCGTGTCTGACCGGAGAAAGCAGAGCATGAAGTGAACACCCTTGAGTCCAGTGTAGAAATGGCTGGCCGGGTTCCTATTGTATTGCTGGCATGTGGCTCCTTCAACCCCATTACCAACCAACACATGCGGCTGTTTGAACTAGCAAGAGACCATATGCATCAAACAGGGCAGTTCGAAGTAATTGAAGGCATCGTTTCCCCAGTCAATGATGAATATGGCAAGCGAGGCCTGGTATCTGCAAAACACCGCGTTGCCATGGCACGGCTGGCCCTGCAGACCTCTGACTGGATACGAGTGGACTCCTGGGAGAGTGAGCAGCAGCAGTGGAGTGAGACGGTCGCCACGCTGAGattgTACCTGGAAGGGCAGGAAGTTTTGGacaataaaactggaaaaggAAAGTACACAacttaaatgaataattaaatgaaatattgtatGACAAAGTAATGGAGATAAAACATGTACTTAATATGTTGGTCGTACTGACCTAATGTCTTCCAGGTGTAGCCAGCTCACTAGTTTTTCTCAATTTCCTACAAGTGGGAGCTGGTTATAATCAATATAGACTCTGAATTGGGTGTGAAATTATACAAACAGAGAAGCAAACAGCATTCAGGTCATGGTGTGTTAATGGATTTACAAGCATGTTGAGTAATACCTCCGGTCTTTTTGGCAAACGGCATGCAATTTTTTATCTCTTACTAACAAGACAGCGGGAGCTACAGTAATTACTGGGCTCTCAGTAGACTCACCCTAGTGCAGCACAATACAAAGCCTTTAATGCTACATTGGCATTTCTATTTTGAGTGCCCTCTGGTTGTGCTAGGGGTGCCTAAgctgcctttaaaaatatagcAGCCCCTGTGATCATTCAGATTTTTGCAAGTAGGTGAAAAGCAGATGCTAATCTCACCTACTAGAACCTGCAAGGAGCTGTTCCATTTCAAATGCGTATTTAggtagtgttgttttttcatttaaagaaagCTGTTTTTCTCTCAGGTTTGTTctctgtgggggaaaaaaactatgTATGAAATTTCCACCAAATCATCAAATGCATTCTGCTATTCTAAAGATTTCCATCTTACATTAATATCTCATAGGAGCAATTTAAGTGCTTTTCTCTGTATGAGGCAGTGAATAGGCGATTGGATTTTGaaagaatgggggggggggaacttCATTTGAATGGTAATGTCATGATTGCCAGCCCTTGGGTGAATTTCTTTGAAAGCAATGAAGTGCTAGTCATTTTATAAAGCCTCCTTAAAGTAAGTGTTCTTTTCCTTAGTGGGCTTTGTAGTAGCTCTTTGTTAGTTAAGTGAATATTTAGGATACATTTAAGagattaaatatgtaattaatattttgtgctttttcaatATAAAGTTGTGCCCCCCTCTGTCACCCCCCCACCAATTATGTAGTCAGTACAGTTgacagaacaaaatatgtttgtcATGTTGGGTAATTATTTACTTGGAGATGCTGTAAGGTTTGCCATGAAGCTTAAAATGTACAGACTTACCAGGAGGAATAAAAATCAGAATAAGAGGACCCTGCCCGTGACCATGTAATTGAAGTGACCAtgctgatataaataaataaaaaaatatctatgaaTGCCCTCTATCATGTCACACTGCATGTGCACATCTTAAAAGCTCTTGTCCATGTACTTGGAGCTGGAGAGAGGTCTGGGGAAGTTGTTCTGTTGTGCTGCAAACACTTGTGACACGTTACAAATTGCTTTCTGTCCCTAATACAAATCCTCTCGTGAAAAGATTCATTTTAAGCTGCATTTCGTAAAGAGCTGATTAAAGCATGAAGTGGCCTCTTGTCTTTCTTGCTGGTGCCCGAAAGCCGACTCTCGTTCAAGTAATTGAAAGTTAGAGGAAAATCATGTACATCTCTAAGAGGATTATGGAAACAGTagcctttttttcttccccttatACTGCAGGCACCATTATGACAGACTTCAGAACAGGCATCAGTCGAAGGAAAACTTGAATAATGTCTACATAAACAAGGCATACACACTCGACAATAAGTCCCCTACAGGAACACCGCGGCTTAAGTTGCTTTGTGGAGCCGATTTCTTGGAGACATTCAAGGTTCCCAAGCTCTGGAGGGAAGACCACATCGTCGAACTCGTCGGCAAGTTTGGCTTGGTGTGCGTCAGCCGTGCCCACCTTGACCCCTGCCGGCTGGTCCACGAGTCTGACGTCCTCACCAGGCACAAGCACAACATCTTTCTGGTCAGGGAGTGGATCCAGAATGAGATCAGCGCCACCGAGATTCGCCAGGCCATACGGCGAGGGCAGAGCGTCAAGTACCTCCTCCCAGACTCTGTGATAGAATATATTAAAGGCCACTGTTTATACACAGTGGAGAGCGAGCAGAAAAATGCTGATGGCATCCTTCAGCCCcttaaactgtttaaaaccCTTAATGAGTAAATATTTCATTAGGTGATaatggattttcttttcctaggccgtatttagttttttccctcttcGTTCTCCCAATCTGAAAAGTAATACAAACAAAGCTTGTGCAAGCACACTATTTGGCACTGCATATTTATCTGCTCAGTGGGGAACATGgaggaaaatgtttaaaatgtgctatttgaggtgtgtttttttgtgttgtgaaaattaaattagGCCTTGGAAGGGTGCTCATGATAGTTAGACATGAAATTCACTAAAGCACAAACTCCCCTTTTCACCTGTTTAAAGTGAACTGAACAGAAATTAAGGAATGTAGTATAATTGCTCATTCTATACGGTAAACCCCACTTCTGATGCAATACCTGTATTTTCAGATCAATCCATTtcgtatatatatttttgtaggcTTGCTGAAGGACAGGGAAATCcctttaatatttgtatatatattttgtcatctGATGTTAAACATTGCTGCAATTGTGCGTGACCTTTAAAGTGTTTTGCCTTTCATAATACAGCAGGGTTACTGCACTTCATGATTTGAAATCTAGTCATAATCAACAGTGTGTGTATAAAGCCTTCGGATTGAGTGGAATAACAGATTGAATTTGACTTTACATGCTTTCTGCTACATCAAAATGTTGTTCCTGttacaaaactattttctgGAGAGGTTGTGCTAttcatataaacacattttataaccTGGATGTGAATCTGTAAACAGAACCAAAGGATGTGAGATATTGTATTTGATGAAACAGAATTGGTGAAGTATAAATGAACGTGGATTCTACAACAGAAAATAAGGatgtaatacaaacaatacaaacttGAAAATCTGAAACGTACCCTGTACAaggtttttctttattgttattcttcattaaatgctgattaatatgcaagttTAAGAGATAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69824 lncRNA downstream 348920 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 509990 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 673031 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 681638 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 928616 30236159 ~ 30236395 (-) True G55648
TU69967 lncRNA upstream 730202 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 765456 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 813111 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 1615569 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 1659129 32844095 ~ 32844336 (-) True G56185
AMCG00009274 mRNA downstream 16211 31136569 ~ 31148800 (-) True AMCG00009274
AMCG00009272 mRNA downstream 97987 31066530 ~ 31067024 (-) True AMCG00009272
AMCG00009271 mRNA downstream 145203 30987124 ~ 31019808 (-) True AMCG00009271
AMCG00009269 mRNA downstream 183104 30973122 ~ 30981907 (-) False AMCG00009269
AMCG00009270 mRNA downstream 194153 30947298 ~ 30970858 (-) True AMCG00009270
AMCG00009280 mRNA upstream 288787 31473753 ~ 31477141 (-) True AMCG00009280
AMCG00009279 mRNA upstream 357696 31542662 ~ 31563060 (-) True AMCG00009279
AMCG00009282 mRNA upstream 601803 31786769 ~ 31809463 (-) True AMCG00009282
AMCG00009285 mRNA upstream 697663 31882629 ~ 31900424 (-) True AMCG00009285
AMCG00009286 mRNA upstream 721760 31906726 ~ 31909194 (-) True AMCG00009286
TU69861 other downstream 179016 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 217800 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 227760 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 507399 30602579 ~ 30657612 (-) False AMCG00009265
TU69579 other downstream 910528 30249871 ~ 30254483 (-) True AMCG00009241
TU70548 other upstream 3042308 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 3054518 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 4353921 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 4353921 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 4353921 35538887 ~ 35539810 (-) False G56546

Expression Profile