RNA id: AMCG00009278


Basic Information

Item Value
RNA id AMCG00009278
length 1515
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00009278
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31394879 ~ 31412124 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atCTGTGATAAGGAGTGGCATTACTATGTCATAAATGTGGAGTTTCCTGTCGTGACCTTGTATGTTGATGGAGTAACCTACGAACCTTACCTCGTCACTGATGACTGGCCGATCCACCCCTCACAAATCGATATGCAGCTGACAGTGGGCGCATGTTGGCAAGGAGGGGAGGTGATGAAACCTCGATTCACCCAGTACTACCGTGGCAGCCTCTCTGGTCTGACCATTCGCCCAGGGAAGATTGAGAGTCAGAAAGTGATCTCCTGCCTTCAGGCCTGCAAGGAGGGCCTGGATATCAATTCTCTGGAGAGCCTGGGGAAAGGCATAAAGTTCCACTTCAACCCTGCACAGTCAATACTTGTCATGGAAGGAGATGACATTGAAAACATCAATCAAGCCCTAAGAAAAGTTTCGTACATCAACTCCAGGCAGTTTCCAACTCCTGGCATCAGACAACTTAAAATCTCAACCAGTGTGCAGTGTTTTGGGGAAGACACGTGCATCACCATCCCCGACATTGATGCCTTTGTGATGGTCCTGCAGCCCAGCGAGCCTCGGATCACCATCACTGGGGTGGACCACTTCACACGACCGGCGGCGGAGTTCGGTAGCACCAGAGGCCTAGCCCTGTTCCCCGATATCCGGATCATCAGCACCGTCACGAAGGCAGAGCAGCCAGCGGAGAGAGCAGCTCACCGGGCAGGTGTGCTGGAGGAAATCATTCATAACTTGGATTATTGTGATATTCTGGTAATCGGGGAGGAACTCAATCCAGACCGAGAGAGCCTACATCTGAACCGAAATGAGCTGCATGGAAAACACCTGGACGCAACAAACTCCACTTCAGGAATCTCCATCTATGGTGTGGACTCCATGTCCAATTACGAACAAGTTATCCGGCAGGTGCGATACCAGAACTGGCACAGCGCTGAGCTCTTTGAAAGGAAGTTCAGACTAACATGCTCAGAGCTAAATGGAAGATACACTAGCAATGAATTCAATTTAGAGGTTAATGTCTTACACAACTCAGATTTCATGGAGCATGTAAATCACATGGCGGTTGAGTCTCAGTACCTCCAGGCAATTCACCTTCCAGTGATGGGGCACAATTTAAACAGCGCTCACGGCTCAGCTATCCCAAGTGCTGCCACAGTGGTCATTGTGGTGTGCATTACCTCCCTGGTCCTGATCATAGTGCTGGGCATCTACAGGATCCACGTAGCTCATCAACGATCCTCCAAAAACGGAAACGGAGCGAAAGAAAATGAGATGGATTGGGATGACTCGGCCCTGACTATTACAGTCAACCCGATGGAGAATTATGAAGAGCCACAGCCCGCCGAGGAAGAAGTAAGTGAGGAAGAGGACGGAGATGAGGAAGACGTGGAGGAGGATGACATCACCAGTGCCGAGTCAGAAGACAGTGAGGACGAGGAGCCTGTGAGGCCCGGGGGGCCGCAGGATATCAAGAGACGTACTCAACTGGAGTGGGATGACTCGACGCTACCTTACTAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69761 lncRNA upstream 231728 31155518 ~ 31163151 (+) True G55807
TU69754 lncRNA upstream 444670 30947366 ~ 30950209 (+) True G55800
TU69680 lncRNA upstream 792847 30599932 ~ 30602032 (+) True G55745
TU69678 lncRNA upstream 794645 30599474 ~ 30600234 (+) False G55745
TU69639 lncRNA upstream 897275 30495543 ~ 30497604 (+) True G55707
TU69914 lncRNA downstream 130497 31542621 ~ 31547232 (+) True G55926
TU69917 lncRNA downstream 136407 31548531 ~ 31552162 (+) True G55929
TU70028 lncRNA downstream 641663 32053787 ~ 32057482 (+) True G56021
TU70072 lncRNA downstream 754741 32166865 ~ 32168048 (+) True G56062
TU70077 lncRNA downstream 762183 32174307 ~ 32179259 (+) True G56064
AMCG00009277 mRNA upstream 24102 31355117 ~ 31370777 (+) True AMCG00009277
AMCG00009273 mRNA upstream 258309 31131150 ~ 31136570 (+) True AMCG00009273
AMCG00009258 mRNA upstream 447594 30944371 ~ 30947285 (+) True AMCG00009258
AMCG00009259 mRNA upstream 458961 30928174 ~ 30935918 (+) True AMCG00009259
AMCG00009260 mRNA upstream 517847 30865491 ~ 30877032 (+) True AMCG00009260
AMCG00009276 mRNA downstream 7716 31419840 ~ 31424011 (+) True AMCG00009276
AMCG00009281 mRNA downstream 180924 31593048 ~ 31604365 (+) True AMCG00009281
AMCG00009283 mRNA downstream 508563 31920687 ~ 31940691 (+) True AMCG00009283
AMCG00009284 mRNA downstream 542547 31954671 ~ 31959897 (+) True AMCG00009284
AMCG00009288 mRNA downstream 556695 31968819 ~ 31999086 (+) True AMCG00009288
TU69474 other upstream 1399441 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 1483315 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 2220179 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 2287971 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 749636 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 2588672 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 2603546 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 3976790 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 5947977 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile