RNA id: AMCG00009279


Basic Information

Item Value
RNA id AMCG00009279
length 5563
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00009279
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31542662 ~ 31563060 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagagagagagagagagagagggagttcagtgtagtaaaaaaaaaaaattgttgtatttttccaaCCTCTCATCCCTAGTGTGTAAACACCGCTTAAGACGGCTGTCCAGCCGCGGTTGCAAGGGTAATTTGACCCCACTGGCGGATTAAAGTAGGTCTGTTTTGTTTGGCAAGCCCTCCACCACAATCTGCGCCTCTTCTCCTGTGCGCAGGGGCTGAGAATGAGAGAGAATGAGTCAGAGAGATACCCTGGTGCATCTGTTTGCTGGAGGGTGTGGGGGCACAGTTGGTGCCATCCTAACGTGTCCACTGGAAGTGGTGAAAACAAGGCTGCAGTCTTCCTCGGTCACTCTGTACATCTCTGAAGTCCAGCTGAGCACCGTCAATGGAGCCAGTGTCAACCCAGTGGCCCGTGTCTCTCGTGGACCTCTCCATTGCCTGaaGTTAATACTGGAAAAAGAAGGCCCTCGTTCTCTCTTCAGGGGTTTAGGACCTAATTTGATTGGTGTGGCTCCTTCCAGAGCTATATACTTTGCTGCTTACTCCAGTGCAAAAGAGAAATTGAATGGTATTTTCGAGCCAGATTCTACCCAGGTGCATATGGTGTCAGCTGGACTAGCAGGGTttacagcaattacagcaaCCAATCCTATCTGGCTTATAAAGACTCGCTTACAGCTGGATGCAAGaaacCGGGGTGAGAGAAGAATGAGCGCATTTGAATGTATCAGAAAAGTATATCAGTCAGATGGGATCAGAGGTTTTTACAGGGGCATGTCTGCGTCCTATGCAGGCATCTCTGAGACTGTGATTCACTTTgtaatttatgaaaatattaaacgTAAACTACTGGAATCAAAGTCTGCTTCTAACATGGACGATGAGGATGAATCTGTGAAAGATGCATCTGATTTCTTTGGACTTATGATGGCAGCAGCCACCTCAAAAACATGTGCCACCTCCTTAGCATATCCACACGAAGTAATACGTACAAGACTACGAGAGGAGGGAACCAAGTACAGATCTTTCTTCCAGACACTTTCAATGGTTATAAAAGAAGAAGGCTATAGAGCGCTTTACCGTGGTCTCACCACACACCTGGTCAGACAGATTCCAAACACGGCTATAATGATGTCTACCTATGAACTTGTAGTTTACCTGCTTCATGGATAACAACCAGATTGACCGTGACAGAAGTTTGGAGACCAAAGGAAAAGAGAGGACCAGAAAGCACCAAATCCTGTTTGGTGTCAGGCAGAAAAGACTCCAGTCAGAAATGCTAATGCTACACAGAATGGATGGCAGGCTGGTATCCAGAAGTAGTGCTGATGAACAGGAAGGATGTCGAGCCAGGACTACCAAACTGTCTGTTTCTCCGCCATGGAGCTACTTCAGAAGAGCTTGAAGGGAATGCTTAAACCCCCCCAAAACCAATCCATCCCATTTTCTGccatgtgtatttaaatgtgtattataagCAGCAGTCACCCCCCTTTTCAAAGTCGAGTGCTCCAGTGCAATGAAGTTGGCTACCATGGGTTGCTTGGCAacggttttatttaaaaatccaccccttttaatacatattgtaagtaaatacacaaacattttttatacttAGGCATAAGTTTGGCTTTTGGTTACATTGTACTTTTAAAGTTCACTATTTCAAACTTGAGACTTACAGAAAGAGAGTTGCACAATGTAGATGGGGCTATGATTAAGTTTTTGAATGTCAAGCACCTGTTGAAAAGCTGAAAGTTGGATATGTGAGCAAAACGTCTGGGATAACAAGTTACATTGTTGTCTCGAGCCATGGAAGTGGATACTGTGAGGGAGGTTTgccattattgtattttagcTCTGATGTCCATGATGTGATGAAGTCAAGTTTTGGTTTCTTTAAATTGAACACCAGCTATCATCAAAACATGTGGATTGTATTTGGCAGAACGGTAAAAATTTCATAACTATGAGAAATCGGTCAAAAAAAGTATGTAGACATCATTTTTGTGATTTGGGTTTTTGCACAATgtgatttgaaaaatatttgttcaagCATTCCCTGTAAAGGCTGCATTATCCCTTATAGTCGGGGTTTAGTAGAATTTGCGGTTTGTCATCTCAAGGAACGTATGATGAGTGTTTATCTGTCCTCCTTGCATCACCTTGTTCTCATTAATATTCTGGTCAGTATGAATGGTGTTGACATGAATCTTTCATATTTAAGGTTAGAATACTGGATTCAGGCCAAGccttaaattattttccaatttatttaGAACTTGTTAAAACTGAACTAGACAatttagatttgatttgatgttcAATGCAATGTATTGGTTGCCATTGAAATTATGGTACTTCAAACTCACATGACGTTTTCATGaatctctcttgctctctcgtttgtttgtttgtttgttttgtgtgtgtgtgtatatatatatgtgtgtgtatatatatatatatatatatatatatatatatatatatatatacacacacacacacttttttttattttatatattttttaacttgtgTAATTCCTTAAACATGaactgtatactgtatgtagAAAGATGGGATAACTTATGCAgtatttaaaaaccaaaagtACATCAAGGTTTGATTTGATCAAAGTAAATTAACTACaatcagaatttaaaaataaagattttaaaacaatgtttcatatttttattctgaaaaaaatatcatACAATGCAGTTCTGTTTTCTCTACCAGTTGCTTGAAATTTCAAAGGATTGATATTCCTTTTCCTATGTGTATGGTGAATCCTGGCGTAAATGCAGGTAgttggtttttctttttggtttgtaCCAGACCATTTATTTGTCTTGACAACCATGTAATCTGATATTCTGATATTAGGCAACACACTCATTTACTGTTAGTTTTGAACTAATAGGAGTCATCTGTCTTAATTACTTGAATGTAAGAGGTTTGACTaaagtaaagaagaatggtAACACAAAGCAAGCCCATTAATAATCTAAATTTACTTCAAATCTACACATGTAATACTTTAATCTGAtctttaacacacacaaaaactacaTTTCCAGCCAACTTCCTTCAAAGAATGACCATATGTGAATGGTGAAATCAATCTCTGAATGCCAACCAAAAGGGGAATGTATGCACTATAAACAGATAAGTGTTCTTCCCTGGTGTAAATtgcaaacatgcattttatgcAGTGGCTTAAGATTGATTTCTTACGCACTTTGTGGCCTTTTTTGGCTTGTGATAATccttatttgatttatttttgtgggtGTGGTGGGGTGGTGTGGGGGGTAGTGAGATTGGTCATGTAACAAAAAAGATTTTGTCttgattaatcatttaaatatattatgtacaGATCAGTGTACTGATTagttctgatatatatatatatttatatatataaatatatatttaaaaaaaaatgtaattcgcCTACGTCCATACATTATGCAGTAGCTTGCAGTTAGAGTACTTTTACGACTGCATTTGTTGAATAtctaaggtgtgtgtgtgaaacttGCAACACAATGTagttattgcattttgtttttgtttttttagctgctttttccccttttgtttatttcagttttgatttaatgacaTGCTGGCTTTGGATACATACTTGACAAGGTGGTTTAAGTTGTGATTTCTTGCTTTCTTGACCACCCGCATTTGTTGTAACAACCTTGTTTCTGTGAAATTCAGTGTTCATCTCCTTTCTGTGCGTTATGTTTACACTCACTTCTCACGGGCAATGAAACGACCCCCTTGTCTTTGTGTGACTTGTCATAGAGATGTTTCAAGCTTGTCCGtcaagtttttaaattgttgtgtTGTCCTGGCTAATCATGTAAGTCATACGGTGCCCTGGTAAActtatatatatcagtattaTTTTGTAACGTATTAGGAAGGCATTATtgatttgctttattaaaatattacctGAAAATGAGCCTAACATTGATGTAAATTCATATCCCTTCTGCATTTTTGCAATCGTGGGATATAATACCATTCTGCTTTTGGTCTCTGATGTTGGAAAGCAGGCAACCGTTGTTCTTCTCCAGATTGATTGGTGGGTGACTTAACCCAGGTCATGATACACATCTGTGTTCAGGCTTGTGGTGCGGACCTCACAGACGGAGGCGAttgaattctgaaatgaaaatccGTCCGGTAACAAGGAGGGCTTGTCTGCACCAGCAATCTGGTGAGGACTGTGAAAACGGGCCAAAATTGAGAAGGGTCCTTGTTTGCAGTGGCTGTCTATCTAGACTGGAAGATGAGGTATGTTCTTGGTTCCTTGATTTTTGCAGTGTGCACCCATTCAGGCAGTAAGAGCCTCGTCACCTCATCAGTGTAACTGCGGTCTGTTTTAGATGACTTTGTTAGGCAACGCAATATGTAGGCAAATACCATGCTGTACAATTACTGCCGTTTCTGCCTTTTATAGGATGTGGAAAGAcaaccttgttttgttttgttgatgtaaCGGGGCTTTCTGAATCTCATTGAGCAGTGATTGTATTCATAACTACCATTCTCTACTTTACTCGGTGGTGATAATAGCTTGTGCCATTGTAGAATACAGCAGTAGGTAACTTATTATGCAAGTGGGTTCCTTTACATCCCTTGGCCCTAAAATCCAGGACTGTTGCTACTTGTTTTCTCGGTGCTtcatgcatgtaaaataaacgcacaaaacagcagcagcagcaacaaatGTGTACAGTAGGCAATGGTATACGAGCATCTGGTGTACAGTATTAATTATGGAATCTTAGAATCAAGTGAATTGAAATGGATTTTGCATTTCATCTGATGGCAAACGgttgctttgctttttgttttcagtgtcgTGACCTGTCTTTTGCTGCTCTGGTGCTCAAGTACCATGAATTGCGAACAATTATCTTGCAGGCAAATGCAACCGACTGCATTTTTAGTGATGCACCTAGTTTATTGGGGGAAGTACTTGATCTATATAAGGAGGCTAGAAAAggaaaaattcaaattaatgtgACAGTCCTGGATTTTACTTTTGTGTGCGTTTTACCATAGTTTAACTGGGTACTATTTTCTGTACTATCGTACTGTTTGGTAGGAGAATGCCTatttttggatttattttttggccAGAAGGTGGTGCTACAATACGCATTGGTTAACACTACTAGAAATTCCCCAGTCAGCCTGTGTGATGTAATTAACTACTcttagtatttttctttttttgaaccTGAAGGAAATGTGGCCTATTCAGGGCCTCACTATGCATTATCATACCTCCTTTTGTACAAAaactatcaaaataataaaataaaaaaaagaatgcaaatAAACTATTGCAGTGTaatctatttatacatttaaagttCACTTGTTGCTTTTGCGGTTTTAACTTTCAAAATGTGCAATGTTTAACTTAATGccctcttttcttttgtaattagTATATAAAGTTATTTAAGTTTATATGGATTTGCTGTGTATTAACACGTTATCTTGCTGACT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15116 SLC25A33_36, RIM2; solute carrier family 25, member 33/36

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69824 lncRNA downstream 726571 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 887641 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 1050682 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 1059289 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 1306267 30236159 ~ 30236395 (-) True G55648
TU69967 lncRNA upstream 352108 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 387362 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 435017 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 1237475 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 1281035 32844095 ~ 32844336 (-) True G56185
AMCG00009280 mRNA downstream 65521 31473753 ~ 31477141 (-) True AMCG00009280
AMCG00009275 mRNA downstream 357698 31150912 ~ 31184964 (-) False AMCG00009275
AMCG00009274 mRNA downstream 393862 31136569 ~ 31148800 (-) True AMCG00009274
AMCG00009272 mRNA downstream 475638 31066530 ~ 31067024 (-) True AMCG00009272
AMCG00009271 mRNA downstream 522854 30987124 ~ 31019808 (-) True AMCG00009271
AMCG00009282 mRNA upstream 223709 31786769 ~ 31809463 (-) True AMCG00009282
AMCG00009285 mRNA upstream 319569 31882629 ~ 31900424 (-) True AMCG00009285
AMCG00009286 mRNA upstream 343666 31906726 ~ 31909194 (-) True AMCG00009286
AMCG00009287 mRNA upstream 356102 31919162 ~ 31919851 (-) True AMCG00009287
AMCG00009290 mRNA upstream 377746 31940806 ~ 31953635 (-) True AMCG00009290
TU69876 other downstream 357696 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 556667 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 595451 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 605411 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 885050 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 2664214 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 2676424 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 3975827 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 3975827 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 3975827 35538887 ~ 35539810 (-) False G56546

Expression Profile