RNA id: AMCG00009280


Basic Information

Item Value
RNA id AMCG00009280
length 738
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00009280
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31473753 ~ 31477141 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCCAGAAAATCTCAGGGAGTATAAAGTCTGTGGATGTGCGGGAGCCTGCGTACCGGCCGGTGAAACGGGAGCTGCGGGGTCCTGACTTTTGCAAGCCTGCCCGCCTCGACATGTTGCTGGACATGCCCTCCGCCACCCTGGAGGTCCAGCTCAAACACGCCTGGAACAATGAAGATCGCTCGCTCAACATTTTTGTCAAGGAGGACGATAAACTAACCTTCCACAGGCACCCCGTGGCCCAGAGTACAGACTGCATCAGGGGCCGGGTGGGCTACACCAGAGGCCTGCATGTGTGGCAGATCCACTGGCCCACCAGGCAGAGGGGGACGCACGCGGTGGTGGGGGTGGCGACCTCAGAGGCCCCACTTCACTCGGTGGGGTACACCTCCCTGGTGGGCAGCAATTGCGAGTCGTGGGGTTGGGACCTGGGACGCAACAAACTGTACCACAACAGCAAGAACCAACCAGGAGTTACGTACCCTGTGTTTTTGGAACCAGACGAGTCTTTCGTGCTGCCAGATTCTTTGTTGGTAGTGCTAGACATGGACGAGGGGACTCTGAGCTTTATAGTGGATGGGCAGTACCTGGGAGTGGCCTTCAGGGGACTCAAAGGGAAAAAACTCCATCCTGTAGTGAGTGCGGTGTGGGGGCACTGTGAGATCACGATGAGATACGTCAACGGACTTGATCTCTATGCCCCTGCTAGGCTGGAGTTTGACTTCTACTTTTGTTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69824 lncRNA downstream 657662 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 818732 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 981773 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 990380 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 1237358 30236159 ~ 30236395 (-) True G55648
TU69967 lncRNA upstream 438027 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 473281 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 520936 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 1323394 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 1366954 32844095 ~ 32844336 (-) True G56185
AMCG00009275 mRNA downstream 288789 31150912 ~ 31184964 (-) False AMCG00009275
AMCG00009274 mRNA downstream 324953 31136569 ~ 31148800 (-) True AMCG00009274
AMCG00009272 mRNA downstream 406729 31066530 ~ 31067024 (-) True AMCG00009272
AMCG00009271 mRNA downstream 453945 30987124 ~ 31019808 (-) True AMCG00009271
AMCG00009269 mRNA downstream 491846 30973122 ~ 30981907 (-) False AMCG00009269
AMCG00009279 mRNA upstream 65521 31542662 ~ 31563060 (-) True AMCG00009279
AMCG00009282 mRNA upstream 309628 31786769 ~ 31809463 (-) True AMCG00009282
AMCG00009285 mRNA upstream 405488 31882629 ~ 31900424 (-) True AMCG00009285
AMCG00009286 mRNA upstream 429585 31906726 ~ 31909194 (-) True AMCG00009286
AMCG00009287 mRNA upstream 442021 31919162 ~ 31919851 (-) True AMCG00009287
TU69876 other downstream 288787 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 487758 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 526542 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 536502 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 816141 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 2750133 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 2762343 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 4061746 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 4061746 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 4061746 35538887 ~ 35539810 (-) False G56546

Expression Profile