RNA id: AMCG00009282


Basic Information

Item Value
RNA id AMCG00009282
length 4065
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00009282
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31786769 ~ 31809463 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAAGATCGGATACTACAGGGCCCTGTCGAAAGATGTTGGCTGCTCCAAGTGTCCCCTACACAGCTACTCTGTCCGGGAAGGATCGACCTCTTGCACCTGCGACAAGGGCTACTACAGGGCCGAGACCGACCCCGCCTCCATGCCGTGCACCAGGCCTCCCTCTGCCCCTCAGAGCCTGATCTCCAACGTGAACGAGACCTCGGTGAATCTGGAGTGGAGCTCCCCGCAGTACACAGGGGGCCGGCAGGATGTCACCTACAACGTTGTGTGCAAGCGCTGCGGGGCGGACCTGGCGCGGTGCCGGCCCTGTGGCAACGGAGTGCACTTCGCTCCCCAGCAGCTCAGCCTGCAGGGCACCAAGGTGTCCATCAACGACCTGCAGGCTCACACCAACTACACCTTCGAGATCTGGGCCGTCAACGGGGTCTCCAAGCAGAGCCCCAGCCCAGACCAGTCTGTGTCCGTCACTGTGACCACCAACCAAGCAGCTCCCTCTACTGTTACATCCATTCAAGCTAAAGACATAACACGGCATACAGTCTCCCTGGTGTGGCAAGAGCCCGAGAGGCCGAACGGGGTCATCTTAGAGTACGAAGTCAAGTATTACGAGAAGGATCAGAACGAGCGAAGCTACCGCATTGTGAAGACTTCTTCACGAAACACGGATATCAAAGGCCTCAACCCTCTGACATCGTACGTGTTTCATGTGCGCGCCCGGACAGCGGCGGGATACGGAGATTTCAGCGCTCCATTCGAATTCATGACCAACTCCGGTGTTCGAATATACGTCGACCCCTTCACTTACGAGGACCCCAACCAGGCTGTGCGAGAGTTTGCCAAAGAAATCGACGCGTCCTGCATCAAGATAGAAAAAGTAATCGGAATTGGAGAATTTGGAGAGGTGTGCAGCGGACGCCTAAAAATGCCCGGGAAAAGAGAAATCTGTGTGGCCATCAAGACCTTGAAGGCGGGCTACACCGACAAGCAGAGGCGGGACTTTCTGAGTGAAGCAAGCATCATGGGACAGTTTGACCACCCCAATATCATCCACCTGGAGGGAGTCGTCACCAAATGTAAACCTGTAATGATCATCACAGAATACATGGAGAATGGGTCCTTGGATACATTCCTTAGGAAAAATGATGGGAGATTCACAGTCATACAGCTGGTTGGTATCCTGCGTGGAATAGCCTCAGGGATGAAGTACCTCTCCGACATGAGCTATGTGCATCGTGACCTGGCAGCAAGGAATATTCTGGTGAACAGCAACCTGGTCTGCAAAGTGTCCGACTTCGGGATGTCCCGAGTGCTGGAAGACGACCCAGAGGCAGCCTACACTACCCGGGGTGGCAAAATACCAATTCGCTGGACGGCCCCGGAAGCGATCGCATACCGGAAGTTCACGTCAGCCAGCGATGTGTGGAGCTACGGCATTGTCATGTGGGAAGTGATGTCATACGGAGAGAGGCCCTACTGGGACATGTCTAACCAGGATGTAATTAAAGCCATTGAGGAGGGTTACCGTTTGCCACCCCCCATGGATTGCCCTGTTGCCCTCCACCAGCTGATGCTTGACTGCTGGCAGAAGGAGCGCAGCGACAGGCCTAAGTTCGGACAGATCGTCAACATGCTGGACAAACTGATACGCAACCCTAACAGCCTGAAGAGAACGGGCGCAGAGAACACAAGGCCCAACACTACTCTCCTGGACCCCAGCAGTCCCGAGTTCTCCTCATTAGGGTCAGTGGGCGACTGGCTTCAAGCCATCAAGATGGAAAGATATAAAGATAACTTCACTGCTGCTGGGTACACCACTCTGGAAGCCGTGGTACACATGAATCAGGAGGACATGGGCAGAATTGGAATTACTTCAGCAGCACACCAGAACAAGATCTTGACTAGCGTCCAAGGAATGCGGACCCAAATGCAACAGATACAAGGCAGAATGGTTCCTGTCTGAGGCTAAAACGAATAAACTCAAAacttttttaaggaaaaaaaaaaaaattagtttaCCTCATCCATGcactttaattgaaataaaaaaagaaacgaaGAAAAAAAACCCTGCACTTTTATAACTCCATCCCTTGCCCTTCGATATTAGGATATTTTGTTGTCTGCACCATTGTCTGATGACAGCGTACTGAGCAGAAGGGCCTTACTGGTGTGCCTACAGCGTAATAGTGGAAGTTGGAAGACCATTCTTTCTTGTCAAACTGTTGTTGTAGTTTAGTGAAGATccatggattttattttgtaaattgttttatcTGATTTGCTGCCATACTTCGTCTTCAGCGGAATCGATGAACTTCAAACACTGTTATGTCTGTTGGGTGAACCTTGCAAAAAGCagctttggttttgtttttttatgtttttatttttttctggagtAATGCATTTCCTCAGGACATTCCAAAAAGTCTTACACACGATCAGAAATAGTTGCCATGTCAATACAAGCGATGCTCTTCCGAGTGGCAGCTGCGTTCTCAATGGACCCGCCTGTGGGACCCGCCTACGTTCTCAGTGCTCCGTCACCTTTGCTGGACATAAACATGGACAACTGGTTAGAAAACCATTCTCTGGATCTCAATAATGGACAAAAAGAACCCGTCTTTGTGCGTCTACATTGCAGCCTTCGACTCTCTCCGGTTTTTAACTCTGCTTCAAAGTCTCCACTAGACATTCATGCAAAACTGAGTTGTTGCAAGTtggtctaaaaaaaaaaaatcttgcctTACTTCATTTGGAAGTGACCTCTTTCTTGCATTAAGaTTTTTCTAACAGGCGAACTAAACCAACCGCCCACGACGATCAACGTCACAGCCCTCTCtcaaaacaggaaatatatataaaaattctGCAGTGAAGTAAAAAGCATTTCCAGTCCCTTTGGACTCTGCTCCACTTTACTCCGCATCCCAGGACAGAGCAGGCTAGTGAGTAAGCTTGCAGCTAGACTTCCCAAGAGGCctgaattcagattttttttttttttttttttaagtatttaaagtTCAGCAACTGTTTCTAGATAACCATCAGAGGAATGTAATATAAAAGGAAGCCAATCTTTCAGacgtttcatttaaaaaaaaaatatatatatatatatactttttttggggcgatgcatttttttctttgcatgtcATGGCTGCATTTGTGTGTGACGGATATCTTCAAAGCGCTTTAGGTAATTCTAGATGTGTctgaactatttttaaaaacaaacaaaaaacaacctggATCTTTGTCACTCGAAGATGTGTTACAGTACTCTGCATTATCAGTATGTCAATGTGTCAAAAagagacaaaacaacaaaaaagtgtgaTGTACTGATAGTGTCATTGTACAGATCATTGGCCTTCAGATGACTTTACTTTCAATGAACCTAAAGCTTGACTTGCTCTGCTTTCATGAATCACTGTACAAAAGACCAGATGAAAAGGAGaagagacatttttatttgtattcagacTGACAGTGGaactaatatgtattttaaacttacTGCAGGAATGtctttaaaaagggaaaactaatggacagtgtgtttgtctttgtttttgttcttccatACGCACCAAATGTCTGTTACcttcaagattttattttttttaccttacCAATGTTCACACTCTTCAAAAGCCTGTACCTTCAAAGCCAATTCATATGAATGAGAGTTGcatctatttttgtttgtttgtttttatcctttCAAGGACCCGTTTGGAATATGCAAGGACTGTGGGGGGAGGAAAATAGAATGTACTGtatgatgcattttaatttagtttatgaAAATCCTAACTAaacatctttttttgttgtttgcattCAAATGGCATATGAGCTAGACATATAGATGaactatttttttgtctttgtttttttttttgtttgttttgttttgatgaatTTTAGGTACATGTAActtatgtcatttatttatggtCTTTTATACCtagtttgtaaattgtaaaatattagcAAAATGAAAAGAGTGCAAAATGCATTCTTATTAAAGTAGATACGGTATAAAACTCTT

Function

GO:

id name namespace
GO:0030517 negative regulation of axon extension biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0009988 cell-cell recognition biological_process
GO:0048685 negative regulation of collateral sprouting of intact axon in response to injury biological_process
GO:0030900 forebrain development biological_process
GO:0005769 early endosome cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG:

id description
K05110 EPHB1, ELK, NET; Eph receptor B1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69824 lncRNA downstream 970678 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 1131748 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 1294789 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 1303396 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 1550374 30236159 ~ 30236395 (-) True G55648
TU69967 lncRNA upstream 105705 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 140959 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 188614 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 991072 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 1034632 32844095 ~ 32844336 (-) True G56185
AMCG00009279 mRNA downstream 223709 31542662 ~ 31563060 (-) True AMCG00009279
AMCG00009280 mRNA downstream 309628 31473753 ~ 31477141 (-) True AMCG00009280
AMCG00009275 mRNA downstream 601805 31150912 ~ 31184964 (-) False AMCG00009275
AMCG00009274 mRNA downstream 637969 31136569 ~ 31148800 (-) True AMCG00009274
AMCG00009272 mRNA downstream 719745 31066530 ~ 31067024 (-) True AMCG00009272
AMCG00009285 mRNA upstream 73166 31882629 ~ 31900424 (-) True AMCG00009285
AMCG00009286 mRNA upstream 97263 31906726 ~ 31909194 (-) True AMCG00009286
AMCG00009287 mRNA upstream 109699 31919162 ~ 31919851 (-) True AMCG00009287
AMCG00009290 mRNA upstream 131343 31940806 ~ 31953635 (-) True AMCG00009290
AMCG00009297 mRNA upstream 244345 32053808 ~ 32060010 (-) True AMCG00009297
TU69876 other downstream 601803 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 800774 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 839558 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 849518 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 1129157 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 2417811 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 2430021 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 3729424 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 3729424 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 3729424 35538887 ~ 35539810 (-) False G56546

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000190_01061817_01090001.mRNA True 3978 mRNA 0.51 20 CI01000190 1061385 ~ 1090469 (+)