RNA id: AMCG00009285


Basic Information

Item Value
RNA id AMCG00009285
length 909
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00009285
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31882629 ~ 31900424 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAAGCGAAGtttggACAAACATATTTATGCCTTTTCAGAGCACACAAGCCACTCGGACGAAGGTTCAGAAGTGGAGTCGGAGCCAGACCTGCCTCTGAAGAGAAAGCAGCGACGCAGCCGGACTACCTTCACAGCAGAGCAGTTGGAAGAGCTGGAGAGAGCTTTCGAGAGGACTCACTACCCTGACATCTACACCCGCGAGGAACTGGCCCAGAGAGCCAAGCTGACTGAAGCACGTGTCCAGGTGTGGTTCAGTAACAGAAGAGCAAGATGGAGGAAACAAGCAGGAGCCAATCAGCTGATGGCTTTTAACCACCTGATCCCTGGAGGGTTCCCTCCATCAGCAATGCCCACTCTGCCACCCTACCAACTGTCCGACAGCCCCTATCCCCCCACGTCCATAGCACAAGTGTCAGAGCAGACGAGCACGGTTCACAGGCCTCAGCCTCTGCCGCCCACCTCCGTACACCAGGGCAGCCTGAACTCAGCCCCGGAGAGCAGCTCTGCCTACTGCCTGCCCTCTAGCCGACATGGCTTCTCAGGCTACACAGACAGCTTTGTGACTGCATCAGGACCCTCCAATCCCATGAACCCCTCCATCAGCAATGGCCTTTCACCTCAGGTAATGGGACTTTTAAATCCCGGTGGAGTCCCTCACCAGCCACAGAGCGACTACgccatttctcctctgactgggGGGCTGGAGCCCAGCACCGCCATGTCGGCCAGCTGCAGCCAGCGCCTCGACCACATGAAGACCCTGGACAGTCTGCCCAGCTCCCAGTCGTACTGCCCCCCCACCTACAGCTCGTCAGGCTACAGTGTGGACCCGGTTGCAAGCTACCAGTACGGGCAATACGGCCAAAACGGGGGCGGAGAGCGCAACATCTGCAAAGACTATTAA

Function

GO: NA

KEGG:

id description
K09381 PAX3_7; paired box protein 3/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69824 lncRNA downstream 1066538 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 1227608 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 1390649 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 1399256 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 1646234 30236159 ~ 30236395 (-) True G55648
TU69967 lncRNA upstream 14744 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 49998 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 97653 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 900111 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 943671 32844095 ~ 32844336 (-) True G56185
AMCG00009282 mRNA downstream 73166 31786769 ~ 31809463 (-) True AMCG00009282
AMCG00009279 mRNA downstream 319569 31542662 ~ 31563060 (-) True AMCG00009279
AMCG00009280 mRNA downstream 405488 31473753 ~ 31477141 (-) True AMCG00009280
AMCG00009275 mRNA downstream 697665 31150912 ~ 31184964 (-) False AMCG00009275
AMCG00009274 mRNA downstream 733829 31136569 ~ 31148800 (-) True AMCG00009274
AMCG00009286 mRNA upstream 6302 31906726 ~ 31909194 (-) True AMCG00009286
AMCG00009287 mRNA upstream 18738 31919162 ~ 31919851 (-) True AMCG00009287
AMCG00009290 mRNA upstream 40382 31940806 ~ 31953635 (-) True AMCG00009290
AMCG00009297 mRNA upstream 153384 32053808 ~ 32060010 (-) True AMCG00009297
AMCG00009294 mRNA upstream 166419 32066843 ~ 32083265 (-) True AMCG00009294
TU69876 other downstream 697663 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 896634 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 935418 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 945378 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 1225017 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 2326850 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 2339060 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 3638463 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 3638463 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 3638463 35538887 ~ 35539810 (-) False G56546

Expression Profile