RNA id: AMCG00009286


Basic Information

Item Value
RNA id AMCG00009286
length 591
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00009286
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31906726 ~ 31909194 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGCAATAGCTGGGGCAGTGCCAAGGATGATGAGACCCACGCCAGGACAGAACTACCCGCGCAGCGGATTTCCACTTGAGGtttcTACCCCTTTAGGACAAGGGAGGGTAAACCAGCTGGGTGGAGTTTTCATTAACGGCAGACCTTTACCAAATCACATCAGACACAAAATAGTGGAAATGGCCCATCACGGCATCAGGCCCTGTGTCATCTCCCGCCAGCTCAGAGTCTCCCATGGGTGTGTGTCCAAAATCCTGTGCAGGTACCAGGAGACGGGCTCTATCAGACCTGGCGCTATTGGAGGAAGTAAGCCCAAGGTGACAACGCCAGATGTGGAAAAGAAAATTGAGGAATACAAGAGAGACAATCCTGGGATGTTTAGTTGGGAAATTCGAGATAAACTGCTGAAAGATGGCATTTGTGACCGTAATACAGTTCCCTCagtGAGTTCAATTAGTCGTATTATGCGGAGTAAATTCGGAGGCAAGGGCGAAGATGAAGATGACGATGACGAGATTGAAAGAAAAGAGTTTGAAGAAAACGAAAAGAAAGCGAAGCACAGCATCGACGGGATCCTGGGAGACAGA

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0050936 xanthophore differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69824 lncRNA downstream 1090635 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 1251705 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 1414746 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 1423353 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 1670331 30236159 ~ 30236395 (-) True G55648
TU69967 lncRNA upstream 5974 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 41228 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 88883 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 891341 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 934901 32844095 ~ 32844336 (-) True G56185
AMCG00009285 mRNA downstream 6302 31882629 ~ 31900424 (-) True AMCG00009285
AMCG00009282 mRNA downstream 97263 31786769 ~ 31809463 (-) True AMCG00009282
AMCG00009279 mRNA downstream 343666 31542662 ~ 31563060 (-) True AMCG00009279
AMCG00009280 mRNA downstream 429585 31473753 ~ 31477141 (-) True AMCG00009280
AMCG00009275 mRNA downstream 721762 31150912 ~ 31184964 (-) False AMCG00009275
AMCG00009287 mRNA upstream 9968 31919162 ~ 31919851 (-) True AMCG00009287
AMCG00009290 mRNA upstream 31612 31940806 ~ 31953635 (-) True AMCG00009290
AMCG00009297 mRNA upstream 144614 32053808 ~ 32060010 (-) True AMCG00009297
AMCG00009294 mRNA upstream 157649 32066843 ~ 32083265 (-) True AMCG00009294
AMCG00009295 mRNA upstream 176608 32085802 ~ 32092762 (-) True AMCG00009295
TU69876 other downstream 721760 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 920731 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 959515 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 969475 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 1249114 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 2318080 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 2330290 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 3629693 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 3629693 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 3629693 35538887 ~ 35539810 (-) False G56546

Expression Profile