RNA id: AMCG00009287


Basic Information

Item Value
RNA id AMCG00009287
length 690
RNA type mRNA
GC content 0.64
exon number 1
gene id AMCG00009287
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31919162 ~ 31919851 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGAGGCGAATCCAGGCGTGAGCGGGGCGCAGGCTGCTGCCCCGTACGAGGAGCATGAGTGCAAGATATGCTACAATTACTTCGACCTGGACCGCCGGGCTCCGAAGATCCTGGAGTGCTTGCACACGTTTTGCGAGGAGTGCCTGAACACCCTGCATCTCAGGGAGGAGCGGCCCTGGCGCATCGGCTGTCCGATATGCCGCCACAGGACCCCCGTGCCGGACTACCGGATCCAAAACCTGCCCAACAACACCAAGGTGACGGAGACTTTCCCTCTGTACATCGAAGCCGACCCCTTGCCTCAGGACAGCCTGCCCCCGCACCCTCCGCCGCGGCACCCGGCGCTGGCCCCGCGGTCGGAGGAGGCGCAGCCCGGGGCCCCGGCCCAGCCGCCCCCCGGCCCGTCCCCCGGCCGCTACGAGAGCTGCCAGAACTGCAAGCGCGCCGCCCTTACGACGGGCTGCGTGTGCGTCGtcttctccttcctctccaTGCTCGTCCTGCTGTTCCTGGGCCTGATCTTTGTGCACAAGTATAACAACCCCCCCTCGCCCGTGGGCCCCATCTGTCTGTCCGTCGCCAGCATTTTAGCCATGTTTGCGGTGGTCGTCACATGGATGATCTGCTGGCTGAAGTACAGACCAGAGCAGGAGAGCAACCGATCGTCCAGCAGAAGAAACACTTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69967 lncRNA downstream 3789 31915168 ~ 31915373 (-) True G55975
TU69824 lncRNA downstream 1103071 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 1264141 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 1427182 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 1435789 30480779 ~ 30483373 (-) True G55703
TU69990 lncRNA upstream 30571 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 78226 31998077 ~ 32031970 (-) True G56012
TU70199 lncRNA upstream 880684 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 924244 32844095 ~ 32844336 (-) True G56185
TU70321 lncRNA upstream 1113126 33032977 ~ 33038239 (-) True G56256
AMCG00009286 mRNA downstream 9968 31906726 ~ 31909194 (-) True AMCG00009286
AMCG00009285 mRNA downstream 18738 31882629 ~ 31900424 (-) True AMCG00009285
AMCG00009282 mRNA downstream 109699 31786769 ~ 31809463 (-) True AMCG00009282
AMCG00009279 mRNA downstream 356102 31542662 ~ 31563060 (-) True AMCG00009279
AMCG00009280 mRNA downstream 442021 31473753 ~ 31477141 (-) True AMCG00009280
AMCG00009290 mRNA upstream 20955 31940806 ~ 31953635 (-) True AMCG00009290
AMCG00009297 mRNA upstream 133957 32053808 ~ 32060010 (-) True AMCG00009297
AMCG00009294 mRNA upstream 146992 32066843 ~ 32083265 (-) True AMCG00009294
AMCG00009295 mRNA upstream 165951 32085802 ~ 32092762 (-) True AMCG00009295
AMCG00009296 mRNA upstream 178939 32098790 ~ 32109793 (-) True AMCG00009296
TU69876 other downstream 734196 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 933167 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 971951 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 981911 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 1261550 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 2307423 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 2319633 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 3619036 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 3619036 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 3619036 35538887 ~ 35539810 (-) False G56546

Expression Profile