RNA id: AMCG00009289


Basic Information

Item Value
RNA id AMCG00009289
length 1682
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00009289
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32060813 ~ 32066699 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gacagcagacagacagacagacagacagactgagacGCTGCGGAGCCATGTCTGTGTACCGCAATACCATCTGGTTTTTAAAAGGGATCCACGAGTTCACCAGGAACGGCTATGAAGCTGCATCAAAGCACTTTGTGGAGAAGGATTTGGAAGTCTCTGTGTCGGGACGGTCCTTCATGATAACGGGAGGCAACAGTGGGATTGGCAAAGCAGCTGCCCTCGCGATCGCAAAGAAAGGGGGTACGATCCATCTGGTTTGCAGAAATAAGGAGCGAGCCGAGGAAGCCAAAGCAGACATTATCAAGGAGAGTGGAAATAAAGATATTTATGTTCACCTTCTGGACCTGTCAGAGACTCGGAAGGTGTGGGAGTTTGCAGAAGCTTtcaaaaaaaagcataaatcacTGAATGTCTTGATCAACAATGCGGGATGTATGGTGAATCAACGAGAAGTGAATGCAGAGGGTCTGGAAATGAACTTTGCAGCCAACACACTGGTTTCCTCGGGAGGAATGCTGGTTCAGAAACTACACACGGACGACCTGCAGTCTGAGCGAGGGCGCTTTAATGCCACCATGGTCTATGCACAGAATAAGAGGCAGCAGGTGGTAATGACACAGCAGTGGGCCAAATCACACAGCAACATCCACTTCTCTGTCATGCACCCGGGATGGGCTGACACCCCAGGGGTTCAGACCGCTATGCCCGACTTCCATCGCTCCATGAAGGATAAGCTGCGCAGTCCAGAGCAGGGTGCCGACACCGTGGTGTGGCTGGCTGTGTCCGAGGCTGCAGATGCCCTTCCCAGCGGCCAGTTCTTCCAAGATCGGAGTGCTGTTCCCACTCACCTGCCATTAGCTTGGACAAAAGTAACTCCAGAAGAGGAACTGAAATTCATGAATATCCTGGAAGACTTGGCCAAAAGCTTTCAGCCTCACTAAACCTTCAGTGTTGCCTTTGTGTACATCTTATTAAATAAGTTTAATATCTTAATACTATGGGTATTAACTACTTGGATTTGGTATCGGAGGAGGTACATTATacaaaaatgtccttttttgttttttcagtacaAATTTGTTTGTTCTGACTGGAGAGATGGTAGAAACTTCTCATGTGATGAGTGTAGTGTTTTCTGTTCCCAAGACCAAGggaaaaggatttttttttttccattcacttTAATACTGTATCCCCTTACATGGTGCAGTACAATATTCAAGCTgttatcagttttgtttttgaaaagtgGTCTAGGTTTAAAACCTGAcccaaatgaaatgttaaatgtggttCCTTTTCTAAGAATCCCTTCCGTAACTAtactaattgtatttattgtgtaaatcatgtgtatttatattaataatgtaatactaTGCACTTTTTTTCCTCTAAAGCGGTACACTAGTTTACTTTTCAGTCTGCATTCTGTAACAAATGTGAATAGTCAATGCACGAGCAGACCGTGACATGAGTTGTGGAGAAACCAGATTTAATACAGACATGTAATTTCTATGACATTatgctataaaaaataaactgatctAACTTATTGTGGCTCTAATGTACTTGATTTACCGGGGTATAAATGTGTAGTGCTTGAAGGTGTCTGGCAAATAAAGTTGGAACTGGGACCTATACAAACCCTAAATACCTGGCTCTCCTGTCACGTGCCGATA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11168 DHRS12; dehydrogenase/reductase SDR family member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70028 lncRNA upstream 3331 32053787 ~ 32057482 (+) True G56021
TU69917 lncRNA upstream 508651 31548531 ~ 31552162 (+) True G55929
TU69914 lncRNA upstream 513581 31542621 ~ 31547232 (+) True G55926
TU69761 lncRNA upstream 897662 31155518 ~ 31163151 (+) True G55807
TU69754 lncRNA upstream 1110604 30947366 ~ 30950209 (+) True G55800
TU70072 lncRNA downstream 100166 32166865 ~ 32168048 (+) True G56062
TU70077 lncRNA downstream 107608 32174307 ~ 32179259 (+) True G56064
TU70149 lncRNA downstream 481308 32548007 ~ 32553904 (+) True G56120
TU70257 lncRNA downstream 881438 32948137 ~ 32950966 (+) False G56211
TU70258 lncRNA downstream 881438 32948137 ~ 32950966 (+) True G56211
AMCG00009291 mRNA upstream 8420 32050504 ~ 32052393 (+) True AMCG00009291
AMCG00009292 mRNA upstream 51725 32008564 ~ 32009088 (+) True AMCG00009292
AMCG00009288 mRNA upstream 61727 31968819 ~ 31999086 (+) True AMCG00009288
AMCG00009284 mRNA upstream 100916 31954671 ~ 31959897 (+) True AMCG00009284
AMCG00009283 mRNA upstream 120122 31920687 ~ 31940691 (+) True AMCG00009283
AMCG00009293 mRNA downstream 48779 32115478 ~ 32119196 (+) True AMCG00009293
AMCG00009298 mRNA downstream 116426 32183125 ~ 32196353 (+) True AMCG00009298
AMCG00009304 mRNA downstream 454819 32521518 ~ 32533407 (+) True AMCG00009304
AMCG00009305 mRNA downstream 467178 32533877 ~ 32548495 (+) True AMCG00009305
AMCG00009306 mRNA downstream 486963 32553662 ~ 32564937 (+) True AMCG00009306
TU69474 other upstream 2065375 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 2149249 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 2886113 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 2953905 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 95061 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 1934097 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 1948971 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 3322215 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 5293402 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile