RNA id: AMCG00009305


Basic Information

Item Value
RNA id AMCG00009305
length 3745
RNA type mRNA
GC content 0.46
exon number 19
gene id AMCG00009305
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32533877 ~ 32548495 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGAACCGGCGTGACTTTCACACTGACATCCAGCGGGGAGCGTGTGTAGGAGCCGCACAGACACACTTTAGATTAACCGGTTGATGGTTTCAAAATGCAAGTATTAAAAGCAGGACTGATTTTGAGCCAGCGACATTTTAGAAACCCGGGAACCTTAACTATAAAACAGGTGTTAATAAACAGCTGCAGGGCCTGTTCCTCTGGCATCGTCCCAAATGAGCGAATCCGGAACATCGGTATTTCAGCCCACATCGACTCTGGGAAAACCACTCTGACAGAGCGAATCCTTTACTACACGGGCAGAATTTCAGAAATGCATGAGgTAAAAGGAAAAGATGGGGTTGGAGCCATCATGGATTCTATGGAGCTGGAAcgacagagaggcatcacaatccaGTCGGCCGCGACCTTCACCATGTGGAAGCAGCACAACATTAACATCATAGACACCCCAGGTCACGTGGACTTTACTATAGAGGTGGAGCGCTCCCTCAGGGTGCTGGACGGGGCTGTCTTGGTGCTGTGTGCAGTCGGGGGAGTGCAGTGTCAGACCATGACTGTAAACCGGCAGATGAAGCGCTACAACGTGCCCTTCCTCACCTTCATCAATAAACTTGACCGACTCGGGGCCAATCCCACCAGGGCCCTCCAGCAGATGAGAACCAAGCTTAATCAGAATGCAGCTTTTGTGCAAATCCCAATGGGACTGGAAGGCAATTTGAAAGGAATTATAGATCTCATTGAAGAGCGAGCCTTGTATTTTGAAGGACCGTTTGGGCAGGACATACGCTATGATGAGATCCCAGCAGACTTCCGCTTGGAAGCAGCAGACCGCCGGCAGGAGCTGGTGGAGTGTGTGGCCAATGCAGACGAGCAGCTGGGCGAGATGTTCCTGGAGGAGAAGGTGCCCACAGTGGCCGATCTGAAGGTGGCTCTTAGGAGGGCTACAGTCCAGCGCTCCTTCAGCCCAGTTCTTGTTGGAAGTGCCCTGAAGAACAAGGGGGTACAGCCCCTGCTGGATGCGGTTCTGGAGTATCTACCAAACCCCACCGAGGTGCAGAACTACGCCATCCACAACCAAGAGGACTCAAAGGACGCTTCTAAATTATTAATGGACCCAACCAGAGATGGCTCCCAGCCATTCGTCGGTTTGGCTTTCAAGTTAGAGGCTGGGCGTTTCGGCCAGTTGACCTACGTGCGGGTGTACCAGGGGGTTCTGAAAAAGAGCGAGTACATCTACAACACCAGGACGGGCAAGAGGGTGCGCGTGCAGAGACTGGTGCGCCTTCATTCCGACCAGATGGAGGATGTAGAGGAGGTGTATGCTGGGGACATCTGTGCTTTGTTTGGAATCGACTGTGCCAGTGGGGACACCTTCACTGCCCGAGCCTCTTCCAATCTTTCCATGgAATCTATTCATGTTCCAGATCCAGTGATTTCAGTTGCAATGAGGCCTGCGAACAAGAATGACTTGGACAAGTTCTCCAAGGGCATAAACCGGTTCACGAGAGAAGATCCAACGTTCAGAGTCCACTATGACACGGAGAGTAAAGAGACTATCATCTCAGGAATGGGAGAGCTGCATCTGGAGATCTACTCCCAGAGAATGGAAAGAGAATACAGCTGTCCTTGTGTGATGGGGAAACCTAAAGTAGCCTTCAGAGAAACCATCTCATCAGCCACACCGTTTGATTTCACACACAAGAAGCAATCCGGGGGAGCAGGGCAGTATGGTAAAGTAATAGGAGTGTTGGAACCCCTCGAGCCTGACAGCTATACCAAAGTGGAGTTTGTGGATCAAACCGTTGGCACTAATATACCAAAGCAGTTTGTTCCTGCAATTGAAAAGGGTTTTCGGGAGGCTTGTGAGAAAGGCCCTCTGACGGGACACAAGATTTCGGGTGTGCGCTTCATCCTCGACGACGGCGCTCATCACATGGTGGACTCCAACGAATTGTCCTTCATCAGGGCAGGAGAGGGAGCTCTGAAACAGGCTATGGAGAAGGCCAAGGTGATTGTCCTGGAGCCTATCATGTCCGTGGAAGTGGTGGCCCCCAACGAGTTCCAGGGGCCGGTCATTGCTGGCATCAACCGCCGCCATGGTGTCATCACGGGGCAGGACGGCGCAGAGGGCTACTTCACTCTCTATGCTGATGTTCCTTTGAATGATATGTTTGGTTATGCCACTGAACTCAGGTCTTGCACAGAGggcAAAGGTGAATATACAATGGACTACAGCAGGTACCAGGAATGTTTACCCAGCTCTCAAGATGAACTAGTCAACAAGTATCTAGAAGCAACAGGTCAGCTCCCCGCAAAGAAAGGCAAGGCCAAGAACTAAAAATCCTCGTCATGTTTTGGaattttccttctgttcatACTTCTGAATAATGTGGACTGTGAGAACACCTGAACCTGTTGGGAATAGTCTCTTTTCATTGTATAGACACTGCAAAAGCATGTCATTTCAAGGAATAAATCTGATCAATATTCAACCATCAACTAGTCAccatgaagagaaaaacaatatttgtctgctacaaattaaactgtatattttagttttgtctgtCCTTTCaataatgtactgtaaatgtgtgtgtgagagagcgagagagagagtggggtagaaaaataatcatgaaaCCATTGTTGTAACTCAGCAGTTTCAGAATTTGTCACCCACTATCTGAATCTGTTTTACAGGAGTTGTATTCTCATTTTACTTTGCAATTCAAATGCTCATAATCCAGTAGTACATGGCACTGCTTTCAGGGACTTATTTTTAGACTGTGTTTCAGGGTGTACAGTAGAAGGTTATGTACTGTGTACAGCTTagaatgttgaaaataaaaatgtattatgttaattgcattttgtgtttgtattcacATAAAATCATAAGACAGCGGAATGAGATTGAGATCATAATCATTAAGCCTGCTAGGAATTGCTGTTACCATATACAAATCAAAAGTCTGACTCATTTTGATATTACTGAAATGAATGGtctaaaaggttttaaaatgagtattatatgtattaaaaaaactaaaaaaaaaaaaaactggggtGTTATTTTCTGACTTACCAAGATAACAAAGCTGTAATTACCTATTTCACACAAatcaaagattaaaaaatgaaagcacagtTTTCAAGTGACCCATCTTTTATTTTCGTATTTCaatattaatgattttataGGAATGTTCCACATGCATTTCCTACCTCCACATCTGAGGCTGGTGTTGGCAGTTTGTTCTCTGTGTCATCTTGACTTatCTCAAGGAAGAACTCTTTGCCATCATCTTCTTTGTATATAACACTGTTGGGAGACTCGCTTTGAAGGTGAGGGggatctctgtctctctcttcggTTTGTAGCTCTGTCTGGACAGTTAGAAGTGTAGGGTGGCCATAAACCACTGGAAGTACGGCCAGAGCGATCCACAGTGCCCGGCCCATGTTTGTTTGGAATGAGGATTAGAGACCTTCAGAAACGTTCCAGTTATACCCTCTCTCCGCGTACGTCAGACCATCAGATTCCTCCCAGCGTTGATAAGGGTAAGTGACACTCTCCAGatcagcttttttgttttttttctttctctcctttctttcctttcattttaaacaaaccttGGTCTCGCACTTCTGGAGGTTAAGCTGCACCTTTTTCCCCCCATCTGTTTGTCATTCTTGTTTTCAGGGAAAAGTAATGTAATACATACTGGCATAGAC

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K02355 fusA, GFM, EFG; elongation factor G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70077 lncRNA upstream 354618 32174307 ~ 32179259 (+) True G56064
TU70072 lncRNA upstream 365829 32166865 ~ 32168048 (+) True G56062
TU70028 lncRNA upstream 476395 32053787 ~ 32057482 (+) True G56021
TU69917 lncRNA upstream 981715 31548531 ~ 31552162 (+) True G55929
TU69914 lncRNA upstream 986645 31542621 ~ 31547232 (+) True G55926
TU70257 lncRNA downstream 399642 32948137 ~ 32950966 (+) False G56211
TU70258 lncRNA downstream 399642 32948137 ~ 32950966 (+) True G56211
TU70326 lncRNA downstream 557875 33106370 ~ 33106621 (+) True G56261
TU70327 lncRNA downstream 561244 33109739 ~ 33110019 (+) True G56262
TU70333 lncRNA downstream 733042 33281537 ~ 33281764 (+) True G56268
AMCG00009304 mRNA upstream 470 32521518 ~ 32533407 (+) True AMCG00009304
AMCG00009298 mRNA upstream 337524 32183125 ~ 32196353 (+) True AMCG00009298
AMCG00009293 mRNA upstream 414681 32115478 ~ 32119196 (+) True AMCG00009293
AMCG00009289 mRNA upstream 467178 32060813 ~ 32066699 (+) True AMCG00009289
AMCG00009291 mRNA upstream 481484 32050504 ~ 32052393 (+) True AMCG00009291
AMCG00009306 mRNA downstream 5167 32553662 ~ 32564937 (+) True AMCG00009306
AMCG00009308 mRNA downstream 24444 32572939 ~ 32752465 (+) True AMCG00009308
AMCG00009311 mRNA downstream 211038 32759533 ~ 32760129 (+) True AMCG00009311
AMCG00009309 mRNA downstream 234636 32783131 ~ 32800441 (+) True AMCG00009309
AMCG00009312 mRNA downstream 299055 32847550 ~ 32847873 (+) True AMCG00009312
TU70069 other upstream 368512 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 2538439 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 2622313 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 3359177 29173139 ~ 29174700 (+) True AMCG00009220
TU69269 other upstream 3426969 29103640 ~ 29106908 (+) False AMCG00009208
TU70453 other downstream 1452301 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 1467175 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 2840419 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 4811606 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 5061848 37610343 ~ 37616283 (+) False AMCG00009428

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016591 True 2776 mRNA 0.52 18 NC_007126.7 1167119 ~ 1195012 (+)