RNA id: AMCG00009315


Basic Information

Item Value
RNA id AMCG00009315
length 1428
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00009315
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32852198 ~ 32873274 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tGGTCGTATGCATTGGAAAAGCCAAACACTGGAAGCATTTTCAGCATTGCCTGGTCAGTGGATGGGACTCAAGTAGCTGGCGCCTGTGGGAATGGACACGTGATTTTTGCCCATGTAATCGAGCAGAGATGGGAGTGGAAAAACTTTGAGATAACACTCACAAAAAGAAGGACCATGCAGGTGCGCAATGTGCAGAATGACGCACTGGATGTTTTGGAGTTCCGGGACCGTGTGATAAAAGCTTCCTTGTCCCATGGGCATTTGGTAGTGACAACATCCCTGCAGTGTTATGTGTACAGTGCGAAGAATTGGAACACACCATTGATTTTCGATCTCAAAGAGGGAACTGTTAGCTTGATCCTGCAAGCAGAAAgACATTTTCTGCTTGTGGATGGAGCAGGTATCTATTTGTTTTCCTATGAGGGACGTCTTATTTCTACTCCAAAGTTCCCAGGAATGCGGACTGACATTCTGAATGCACAAACTATCTCTCTTAGTAATGATACCATTGCAATAAGAGACAAAGCTGATGAGAAAGTTATCTTTCTAATTGATGCTCTGTCTGGAAAACCACTCGGAGATGGCAAACCCCTGATGCACAAGATGGAGGTGGTGGAAGTTGCCCTGGACCAGTGTGGAACAGCCAATGAACGAAAGATTGCACTGATCGATAAGAATCGGGATCTGTACCTGACCCCTGTCAGAAGATTTGGACGGGAgccaaaaatgaataaaattgGTACTATGGTTCATACCTTGGCCTGGAATGACACTGCAAATATTCTGTGTGGGATACAAGATACTAATTTCACTGTATGGAATTACCCAAACACTGTGTTTGTGGATAAAGAACTCCTGcccaaaacaatatatatgaaaGATGCAAGCGAATTTAGCAGAAATCCCCAGATTTTAAACTATGTAGGTAATCAGGTTACAATCAGGAGAGCTGATGGCTCTTTGGTGTACAGCACTGTATCTCCTTACCCTGCCATCCTGCACGACTACGTCACTACCTCCCGCTGGGATGATGCTGTCAGACTGTGTCGCTTTGCAAAGGATGAAGAATTATGGGCTTGTCTTGCTGCTATGGCAATTGCAATGGGAATGTGCAAGAAGCAGAAGGAGTCCTTCTTCAAGCTGGTCTCATATACCAAGCAATTCAGCTTGAGCTTCTTTTCCATTCCTAGGGCACTGGAACTGGCAGTAAAACACAAGACACATGTTGACACAGTTCTGGCTTACAGGCAGAAATATTTGGATGATTTTGGcaaaaaagaaaccaacaaaaGGTTTTTGCAGTATTCGGAAGGAGTGGAGGTTGACTGGGAAAAGATACAAGCTAAAATTGAGATGGAGATTGCCAAAGAGCGAGAAAAAGCAGCTACATCCTCTGCAGTGAGAAGCAGCATTTCCTCAAGGCGGTGA

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008104 protein localization biological_process

KEGG:

id description
K19678 IFT80; intraflagellar transport protein 80

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70223 lncRNA downstream 7862 32844095 ~ 32844336 (-) True G56185
TU70199 lncRNA downstream 51303 32800535 ~ 32800895 (-) True G56163
TU70018 lncRNA downstream 820228 31998077 ~ 32031970 (-) True G56012
TU69990 lncRNA downstream 901525 31950422 ~ 31950673 (-) True G55991
TU69967 lncRNA downstream 936825 31915168 ~ 31915373 (-) True G55975
TU70321 lncRNA upstream 159703 33032977 ~ 33038239 (-) True G56256
TU70324 lncRNA upstream 222723 33095997 ~ 33096230 (-) True G56259
TU70325 lncRNA upstream 223310 33096584 ~ 33096850 (-) True G56260
TU70330 lncRNA upstream 270582 33143856 ~ 33144122 (-) True G56265
TU70493 lncRNA upstream 1134329 34007603 ~ 34008987 (-) False AMCG00009332
AMCG00009310 mRNA downstream 21904 32808934 ~ 32830294 (-) True AMCG00009310
AMCG00009307 mRNA downstream 303736 32541621 ~ 32548462 (-) True AMCG00009307
AMCG00009302 mRNA downstream 452491 32393705 ~ 32399707 (-) True AMCG00009302
AMCG00009301 mRNA downstream 581744 32220724 ~ 32270454 (-) True AMCG00009301
AMCG00009303 mRNA downstream 651703 32197225 ~ 32200495 (-) True AMCG00009303
AMCG00009316 mRNA upstream 21975 32895249 ~ 32903560 (-) True AMCG00009316
AMCG00009314 mRNA upstream 54994 32928268 ~ 32939975 (-) True AMCG00009314
AMCG00009321 mRNA upstream 77342 32950616 ~ 32958237 (-) True AMCG00009321
AMCG00009322 mRNA upstream 128154 33001428 ~ 33004290 (-) True AMCG00009322
AMCG00009326 mRNA upstream 1028861 33902135 ~ 33935311 (-) True AMCG00009326
TU69876 other downstream 1667232 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 1866203 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 1904987 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 1914947 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 2194586 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 1354000 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 1366210 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 2665613 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 2665613 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 2665613 35538887 ~ 35539810 (-) False G56546

Expression Profile