RNA id: AMCG00009318


Basic Information

Item Value
RNA id AMCG00009318
length 2139
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00009318
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 33005975 ~ 33016571 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATTGAAGGCATGTGGATCAACGAATATCGCATATGATTGTGTATTTATACCATTAAAACAACTGGCATGTGTCAGTCACGTTATTAGACTTTAGAGAAATGATCCCGACCAAACGTACTGTCATTAATAACTTAACAACAGATCCTAGAGTGTAGTTCGTACCCTCGTGCATGTACAGCAATAGGACCTTACGTAGGCAATTTCTTTAATTGTAAATaacttttgtcttttattttatttagaggTGTAGGCCTATAGAGTGAGGAGTTTAGGCGATGGAGTATATGAAAACACCCGCAGGCAACAGCCAGGGAAACATCCTGTGTTGTGAATGTGGGATCCCAATCGCTCCCAATCCAGCGAACATGTGTGTTGCTTGTTTGAGGACCCAGGTTGACATCACTGAAGGGATCcctaagcaagtctcagttcaTTTTTGCAAGCAGTGTGAAAGGTACTTGCAACCTCCAGGAACATGGATACAGTGTGCTTTGGAGTCCAGAGAACTTCTTGCCTTGTGTCTCAAAAAGCTGAAGGGCTCAATGAATAGGgtgCGCTTGATTGATGCAGGATTCCTTTGGACTGAGCCGCATTCAAAGAGAATTAAGTTGAAGCTAACGATTCAAAAAGAGGTCATGAATGGAGCCATTCTTCAGCAGGTGTTTGTTGTGGAGTTTGTCACTCAGTCACAAATGTGTGATGACTGTCATCGCGTTGAAGCTAAAGATTTCTGGAAGGCAGTGGTGCAAGTCAGACAGAAGCTGATTCTGAAACACAAATTGCATCAGAATTCACTTCGCATTAAGGAAATCCATGATGGAATTGATTTCTACTATGGTACAAAGCAACATGCCCAAAAAATGATGGATTTCCTGCAGTGCACAGTCCCATGCAGgtCTAAAGCATCCCAACGATTGATATCCCATGATATTCATTCTAACACGTTTAACTACAAAAGTACCTTCTCTGTGGAAATTGTACCAGTCTGTAAGGATAACATCGTGTGTCTGTCACCTCGTCTGGCCCAGGCGCTTGGAAACATGGGCCAAATCTGTGTGTGCATCAGGGTGACCAGCACCATTCACCTCATCGACCCCAACACACTGCAAATTGCCGAGGTTGATGGAAGCACCTATTGGCGATACCCGTTCAGCAGTCTGTGCAGTCCGCGGCAGCTGGAGGAGTTTATTGTGATGGATATAGAAATCATCAGAGATCGCAAGCagggagctggagctggcatgAGATCTaacaaaCACACTCTGGCAGAAGTGTGGGTGCAGAAGACCTCTGAGatgaacacaaaccagcagtaCCACTGCTGGACCTATCTGGGACACTTGCTCAACCATGGAGACCTTGTTCTGGGGTTTGATCTTGCAAATGCCAACGTTAATGACGAATTTGTCAACAAGATGAACCCTCATCATGTACCTGATGTGGTGCTAATTAAGAAGAGCTATGACAGAAACAGGCGTCAAAAGCGGAGAAACTGGAAGCTGAAAGAAATGGATAAGGATCGTGAGGGCATGGACACCGATGATGAGAGACAATACCAGGACTTTCTGGAAGACCTTGAAGAAGATGAAGCTCTTAGAAAGAACATCAACATTTTCCGAGatgcGTCTAAAATCCCAGTGGAAAGTGACACGGATGATGACGGCGCTCCGAGGATCTCACTGATGGAGATGCTGGAGGACCTGAAGATCTCTGAAGACGCTACTGGTGCAGAGGGCACGGACATGATGACAGAATAAATTTGGATAATAAGTTTTATAATGGTTTCTTATAGCAGGTTTAATCTTCTTAATTGCTTCCAAAGGTGTGAGACTGTGCTCTGAATCGGCACTGTAGGCTGATTGAGAAATACAGCATTATACTAACATAGTTCACTGTATTTCTAGAAGGATTTGGAGATTGTACCTTCTCATGTCCAAATTAagttcaggaaaaaaatatctttaagCTTTCCTTAATTAACAGGGGACTATGCCAAGCACTATTAACAGAaagatgaataataaaaaaaaacctaaaactaaGATATCGCTGCCATTATTGAccattaaattgcattttgaagtttttgtagattttgaaataactgtaaatcatttaaataaacatgcttaAACTA

Function

GO: NA

KEGG:

id description
K07562 NMD3; 60S ribosomal export protein NMD3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70257 lncRNA upstream 55009 32948137 ~ 32950966 (+) False G56211
TU70258 lncRNA upstream 55009 32948137 ~ 32950966 (+) True G56211
TU70149 lncRNA upstream 452071 32548007 ~ 32553904 (+) True G56120
TU70077 lncRNA upstream 826716 32174307 ~ 32179259 (+) True G56064
TU70072 lncRNA upstream 837927 32166865 ~ 32168048 (+) True G56062
TU70326 lncRNA downstream 89799 33106370 ~ 33106621 (+) True G56261
TU70327 lncRNA downstream 93168 33109739 ~ 33110019 (+) True G56262
TU70333 lncRNA downstream 264966 33281537 ~ 33281764 (+) True G56268
TU70350 lncRNA downstream 440320 33456891 ~ 33457172 (+) True G56282
TU70463 lncRNA downstream 1021563 34038134 ~ 34042259 (+) True G56376
AMCG00009313 mRNA upstream 82537 32907934 ~ 32923438 (+) True AMCG00009313
AMCG00009312 mRNA upstream 158102 32847550 ~ 32847873 (+) True AMCG00009312
AMCG00009309 mRNA upstream 205534 32783131 ~ 32800441 (+) True AMCG00009309
AMCG00009311 mRNA upstream 245846 32759533 ~ 32760129 (+) True AMCG00009311
AMCG00009308 mRNA upstream 253510 32572939 ~ 32752465 (+) True AMCG00009308
AMCG00009317 mRNA downstream 33433 33050004 ~ 33055488 (+) True AMCG00009317
AMCG00009319 mRNA downstream 239898 33256469 ~ 33257811 (+) True AMCG00009319
AMCG00009320 mRNA downstream 421115 33437686 ~ 33451270 (+) True AMCG00009320
AMCG00009323 mRNA downstream 499366 33515937 ~ 33520985 (+) True AMCG00009323
AMCG00009324 mRNA downstream 517803 33534374 ~ 33577599 (+) True AMCG00009324
TU70069 other upstream 840610 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 3010537 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 3094411 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 3831275 29173139 ~ 29174700 (+) True AMCG00009220
TU69269 other upstream 3899067 29103640 ~ 29106908 (+) False AMCG00009208
TU70453 other downstream 984225 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 999099 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 2372343 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 4343530 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 4593772 37610343 ~ 37616283 (+) False AMCG00009428

Expression Profile