RNA id: AMCG00009325


Basic Information

Item Value
RNA id AMCG00009325
length 4801
RNA type mRNA
GC content 0.43
exon number 20
gene id AMCG00009325
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 33951147 ~ 33969816 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCTCAACACTGCTCTTAAAACAGAAGTTGCCTCCACCACATACTACTGGATACTGATTTCAACACAGGATTTTGCCAGAAACTAAACTTGCACCGAAACGAGCTACCCTGCAACCTTAAAGATTTCTTTGGGTATGATAATGTTCAGTCGCTTATAGGTGCTGAGCAAGGACAAACTAGGAACCCTCATTGCTGTCAAAATGGATCCCAGTGAAATGAAGAGCGAGACAGAGCTGCTGGAAAACAGACTAAGCAAGAAGGATTTTGCAAAAATGCAAACCCTTTTCTTGttacCAGAGGTAAAGCAGCCAGTATCCATGATGAAAGAAGAGTTTGTAGATAAGGTCTCTTCACTTGTTGGCCGAGGCACAAAGGATGAGTATGGAGAGCTGTTTGACAAGGTAGACGTGACACGAGAAGGGTTTGTCGACTGGGACAAGCTGACGTCTTTTCTGCTCTTAGAGCTCAACGAGAAAGATGAGCATTCTAAGAGCACTGTGGTTCCTCAATGGAAACCCCTTAAAGTTCTCCCAATGTCACACAAGGAACCTATCCAGTCAATTGTGTACTTGAGGAATACCAACAGATATCTTAGCATCAGTAAGGAGGGGCAGCTGGGAATTTGGGCGGATGGCTTTACCCTGCAGAAAACAATCCGCATTGTCACAGATTCTGTCAAACTCAAAGACCTTTGGGTTACAAGTTTGGTGCTGTTGCCAAATGTGAACAAGATTGCTGTTGGATTTACCAGCAAGGAAATTTGCTTTTATGACCTGCTATCTAAGCAGGAGTTCTCCTGCCAGTATAAAATCCTGGACCTTGAGCACACACCACTAAGTATGGACTACTGGTACAATCCCACTGATGCAGATGAAGCTGTCCTCAGCTTTGGGGACCTTGGTGGAGAGgtcAATGGAATGTGTTTTACAACTGCGCTAATAGCGTTGTTTGAGAGACCCACCACCACAGTAGAGCAGGACTCTGTTATAACCATTAAATGGCAGGAGCTTGTCAATGGCAATCACAAGTGTTGCTATGTTGTGAGACACAAGGGTCATGGAAAGAGCTGGGTTCGACGAGTGCGATACCTTGGCAATCTGGACGCTTTTATCTCTTGCGCCACCAGCAATGTCAACAGCATAGTACTGGCTTGGAAGGAGAAGGAAAGAATGCCACTACGGACCACTGCCATCCACATCGGCAAAGGAACCAACGACTTTGACTATCACCCTGGCCTGAATTTAATTGCATCTGCTGGCATTGACAACAAAGTGTGTCTCTGGAACCCTTACGTGATTTCCAAGCCAGTGGGGGTTCTGCGCGGTCACATGGCCAGTGTCATTGCAGTTCAGTTCATCTTCCACATGGTCCTATACTTCGACGAAGAGCACGGCAGGCTTTTGACTACCTTTAACAACCAGATCACACTGCTGGAAGCGAAACAGGAGATTGGACAGAGAGTGACAAGCCATGCAAAAGTGGTCAGCTGTGTGCTTTACAATCAGCTTTTCAAGCAGgtaattaGCTCTGATGCTGATTCCACCATTATATACTGGATGATTGATACAGGACAGAAGATTAAGCAGTTCACCAAGTGCCACGGTGATGCTGAGATCTCCACAATGGCCCTTGACGCTACCGAAACCAGGCTCTTCACTGGAGGCACTGATGGGACTGTCAAGgtttGGGATTTCAATGGACATTGTTACCATAAACTTAATGCCGTGTTCCGGATGAACAGCTTCACGCAGTTTTTCGTGCAGCCCTCAGAATGGAAGGGAGGAGTGCAGCACCAGAACGACATCCTCTGCGCAGCCATCCTCCCCCCGCAGACCTTGGCCACCGGTAGTTACGATGGCGAAATAATTATATGGAACAACAACACTGAAAATGCTCGTTACAAACTTCATCCGGACGGCACGGGTACACTGAAATCGAAGTCAGACAGTGAGCTGTTAAAGGAAAGGAAGACCTCCATTCCACCTCGGACCTCCTCTGCTTCCTCAGGAAAATTCTCCCCTTCTGTTGTGTTTAGTGAAAGTGATGCCGAATGTAACTACACTGTTACGAGACTCATCTTTTTGGAAGCTAGAAAAAGCCTTGCTGCTGGAGACGCTGCAGACCTGGTGTCGTGTGGAGGGCTGGGATTGGTGAGATTCTGGAGCACCACGAGAATCTGCCTGGGCGCAGAATTCATTGCTCACAGGGACGCCGGCTCCATCATCATGACTGTGGATAAAACGGGCCAATACCTCATCACCGGGGACATTGATGGATGGGTAAAAGTTTGGGATATACAGGAGTATTGCCTTCATTGCACTGATAGTGTGATCAATCAGCCTCCTGCTCTGCTGACAACCTTTCAGCCCCATGTGGACTGTGTCACTCACCTTGAAACATGTGTACACAATGGACAATTACTCCTCACCTCTGCATCTGCTGACTGCAGTGTGGCACTTAGCCACATCTCCGGGTCGATTGTAGGAATATTTGGACAGGAAGAACACTGGCGCATAAATGATATCATTGGTGAGGCTGGCGTGTGGAACTCACAGCTGACAGGATACAGGGAACAGAGCCCAGAGGAAGACTCGCATTCAGTCACCACTCCTGAGGAGATATCAGCTGGAAAGAATTCCCCAAAGCTCGCACAGGACCTTCCAGAGCAAGCTAGGGATAGTGACCTGGAAATAATGGGGCAGCCCACCCTAACCAACCCATGGCAAAACACCATTCTATGGAAAAGATACCaagaaagtaaaaaagaaatTGACCACAAACCTGCAGCATGGAAGGAGTCACAAAGTTCAATTGGTACTTTCAGTTGGCTGCACATTGAAGACCTCAGCAGTGTCTATGAGCTGGAGAAGCCAGATTTTGTCACAAATCCTCACAGATACTTTGGGGAGAAGCCTGAGAAAAAATCTCCCGATCCCCCAGAGATCCATGTCATTTCTGAAACTGTGAAAGCTGCCTTTGATGAGAAGAGTTTATTTCCCAGGGATATCCTGCAAAGTGAACATAAAGCAAGGAGATCACACAGACAGCATGGGTCTCGACTCTGTCAGAAGCCAGGCCACACACAGAGCAGaaaacCCAAAGCAAGTTCTTCAGCAGTTTTCAGACCTTGAAGTCAAGTGATGGAGTACACACGCACAGCTGGATAATTAATCAAAGGCAAAGCGCTCCAGCTGAGGAGGGGGGTTTAAAGAACAAGGAACCATTTGGAAATGAACCTGAGTGTGTTTAAAATTCTCATTAACTGCAAGTTTCTCGAATTAGAAAGACCTTTAAAATCCATAAGGTACCTTCAGAAATACTTGACATTATCATTactagtagtattagtagtagtatatttatTACTCTGAACACAAGCTAGACAGCCCTGGAAATTCACATGCACCTATGTATataactataaaaaataaaacaaaatgtctattttatcctgatttgttttcatgccGGAAAGAACTGTACAGCTTTCAATAGAGATAATCTGTGAGGAACTGTGATTCACAGCTGGTTGTATGCTTTTGTATgacagtttatttgtattcaatgcATCCTGTAATAATGTGATGTACAGTTCAGAGGTCTGGCATACAAGTCTGAACTGTAGAGTTACTTCTTTCACTTTCAACAACATCAGGCTATCCTTATAGTCTGTAGAATTGAGTCCCATTTGAGACTCGGTTGTCTGCTGATGGTCTTATACTCATTTCCCAGGACTCCTACAAAAGTAGAATCTTTAAAAGGTTATGTCTGAGGAAGTATCACTCAATTTATGTACAAAATTTAACTCTAACCAGTAATGAGGTCttagttgttgttgtgttcAATTTCCAAATAGTTGTTGTGCTACATATTACTGGTGTATTTTGCAGcacttgattaaaataaatcgaTCAAGATTAATACACTGTTACTGATATTCAGCTCTTCATTGCATAGACGGTAAATGAGCGCTGCAGTGTAACCCAATCTTAAACTGAGATAATTTATAACCGAAGGGTTTGCCGCttacaagcaatacaaaaaccTCCTCCCTGCACTAATGAAACTCTTCAGCTaagtatgtttttcattaccaCAGGTGATGATCTCTGAAAGTGTAACCGATCTTATTAACATTGCTTGCCTGGTTATAAGTTCCCATCCCTGATGTTAATGAAGTGGCTGAGGTCTGCGCTGGTGCAGCCATGGTTAACCGCCACTCTCTTTACTGTCTCGTAAAGATTAATGCAGATTCTTCATTCAGTGTTTGCAAGTTTTAAGTAAACTTGGACAGCTGTCatgctatataaaaaaaacattatttccaaTTCATGGCGAAGGAAGCAATGCTGAGATTTTGGGGAACTGCCAGCTGGAGAAAACGAATGGccaaatttaattaaagaaacccTTCTATTACTCTGAATAAGGGTTTCAGCTCCTTTAGAGGCAAATTTGCTTTTCCAACTGACAGGTTTACAGGAATGCTACTAGTTGAGGAAGGAGCCCTTGTGTTATTGATAGGCCTCaaccaacattttaatttaactccAGCTACAGAAGAGTTCGATTACACGGCGGAAAAGTGAAATCATTCTTTTCCTCAATTTTTGAGGTCACAAGAAAATCATGTTTGAAACTAAACCCCTTACTTTGGAGTTTTAATAGAATCTAAAATtagaagaataaaaatacaccaTAATCTATCATGTGTTATTCTAATTGGACTTAATGAATTGAAACCGCCTTAATGGtaaatttgtaatttatgaaaaaataagcaGTAACTATTAATAAAC

Function

GO: NA

KEGG:

id description
K24747 WDR49; WD repeat-containing protein 49

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70330 lncRNA downstream 807025 33143856 ~ 33144122 (-) True G56265
TU70325 lncRNA downstream 854297 33096584 ~ 33096850 (-) True G56260
TU70324 lncRNA downstream 854917 33095997 ~ 33096230 (-) True G56259
TU70321 lncRNA downstream 912908 33032977 ~ 33038239 (-) True G56256
TU70223 lncRNA downstream 1106811 32844095 ~ 32844336 (-) True G56185
TU70493 lncRNA upstream 37787 34007603 ~ 34008987 (-) False AMCG00009332
TU70494 lncRNA upstream 79371 34049187 ~ 34050160 (-) False AMCG00009333
TU70508 lncRNA upstream 153790 34123606 ~ 34124979 (-) True G56401
TU70553 lncRNA upstream 269668 34239484 ~ 34316008 (-) False G56438
TU70554 lncRNA upstream 269668 34239484 ~ 34304911 (-) False G56438
AMCG00009328 mRNA downstream 2981 33944249 ~ 33948166 (-) True AMCG00009328
AMCG00009326 mRNA downstream 15836 33902135 ~ 33935311 (-) True AMCG00009326
AMCG00009322 mRNA downstream 946857 33001428 ~ 33004290 (-) True AMCG00009322
AMCG00009321 mRNA downstream 992910 32950616 ~ 32958237 (-) True AMCG00009321
AMCG00009314 mRNA downstream 1011172 32928268 ~ 32939975 (-) True AMCG00009314
AMCG00009327 mRNA upstream 1025 33970841 ~ 33976806 (-) True AMCG00009327
AMCG00009332 mRNA upstream 38205 34008021 ~ 34026160 (-) True AMCG00009332
AMCG00009333 mRNA upstream 72260 34042076 ~ 34050737 (-) True AMCG00009333
AMCG00009331 mRNA upstream 102020 34071836 ~ 34076094 (-) True AMCG00009331
AMCG00009339 mRNA upstream 170290 34140106 ~ 34169068 (-) True AMCG00009339
TU69876 other downstream 2766181 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 2965152 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 3003936 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 3013896 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 3293535 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 257458 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 269668 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 1569071 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 1569071 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 1569071 35538887 ~ 35539810 (-) False G56546

Expression Profile