RNA id: AMCG00009326


Basic Information

Item Value
RNA id AMCG00009326
length 2373
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00009326
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 33902135 ~ 33935311 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCACTGCACGCGCTGATGTGGTGACGGCAGCGGAGACTAAACGCTTCCATTGCGCACATTATTACACACGCATTCACAGTTTGCGGGTCTAAATATTGAAAGGGCAGGATTTTTGGTTTCCGAGAAAAGGCTCCTTACAGAACAAGAATGAATCTGAATGATTTTGTTGTGACAAACAAGCCTAGTTCAGTAAAGCTTAAAACCAGGAATCTGCGAGAGATGAAGCTGGAGACGGCGCACTTGGAGTTTGAAAGTAAGGACATGGAGAGCAGACTTCAGCAACTGAGGCAGAGCATgagcagagagaaggaggaaaGAGAaaaaTCAGGAGGGTATCACTGGAAATCTAGTCAGCCTGGCACATCGACTACTAACCCCCAGGGAGTGGGACAAAACAAGGAGAACAGTTTTCAAAAGTTATCAGCTGGGAAAATGAAGATTAAAGTTCTCAGAGATCAACCAGAAGAATTGAACAAATCGCCAGAAAAACGACCGACGCCAACGGGTTCTCTGCTCAGTAGGAAAACCAAACTGAAGGGAAAGGATTGTGGACAGTGTGAATCAAAGAAGGCAGGGGTGATGTGTAAGGAATGTGGAGAAGACTACTGCCTTGGTTGTTTTGCCAGATTTCACCAGAAGGGGGCACTGAAGCACCACCGAATGATACCCATTCAAATGGAGATCCAGACTTCCATCAGCACATTAGATGTTGTTAGTCAGTTTAAGAAACAAATTGATCCTGAAGGATCAACTGTGAAAACCCGACAGGAGGATGCTGTTCTGGGCAAGCAGTCACCTGTAAGATATCCTTCACCTGAAATTAAAAGGAATGCTGAGATTTTAGTCCTGGGTCATGGAGAGCAGGTGCAAAACCCTACGCCAAGGGACGGAGATCAGTCTTTACTTAAGGGTGTATTTGACGAAGAAGAATCTGCACAATCTTTTCAGGAAGTATTAATGAAATGGAGAGATTGTAAAGGAGACGATAACCAAGAATGGAGCCCCTCAGAAGCTGTACCAGATGAGGAGATGGAGGTACACAGGTACTGCACTTCTCTTTTTACAGCAAGTGAGATTAATCAGCATAATCACCGAACTGAATCATGCTTAAGTGTTGTGGAGTTAGATGAGGCCCTGCACAATCTTGCTGAAAGAAAAGTGAGAGACCAGTATCATGGCCTGAATGGGTTTCTTACTTTAGGCGTTGAAACTAAAAAGCTTGGCCCCAATCCTTTTCAACCAACTACATCATTTGAAAATGAGGGAGACGAAGAACTTCTGAGTGAAGAAACAATAGGAATGGTGGACTGGAGGCCGTGCAGCAGTCTCAGTGAAAATGCGGACGAGGTCGTTGTCAGCAGTGTAATTGGCAGCGCCAGGAGCAGACCTTCCAGCAGCCGTTGCCATCCCATCAACAGTGGTAGAGCTGGCTCCTCTTTAAAGCAACCACCACCACCCGTGGAAGATAAAGAGTCATCACCTGGGAAGAAATTATCTAAATCTTCAAGGCCAAGTACTGCAGAGGCACGGCCGCTATCCAGAGCCGCACTCGAAATTTTGCAGATCGAAACCATAGACTCCATGGAGAAGGATGATCCACGCCAAGATGATGAGGCTGACGATAGCGCGTTGGCAAATCTGGAGGaggaatttaaaatgcttcgaAGAGATGAAGATGTTGATAAAACCAACACGCAAGATTCAAATGCCTTTCGGACTCAAGAATGGATAACAATCCAGACTGCAAAAAGCTGGGATACTGAAGGTCACACAGATGATGAGGAGGAGATTCTAAGAGACAAACAGAATGTTATGTCACTACCCTGACCACAGAAAATGAATTAGGTACCAGTTGTAGAATTTTGTCAGTAACATGGTTCTCAGCaggactgaaattaaaaatactataatttATTGTTGCATAAAGCTATGATTGACCTGGAAATTAAAGTATGTACAATATAGTTTTGAATATAAAGCATATCCTTTGAAAACTGAATAATATACATCATCtcataaaatagttttaatactggagaaattaatacaataaacatacatattcattcacacacacacccccaccccaggGCAAAGGTTTTATCCCAGGTTCTGCCAAGGTTTCCCATACCTCAAGGTTACTATTATTACAGAAGCTAACAAATGTTGCATACCCGAGTGagattttcttaaaaataattgtatccaTGATAGTGGTGATTACATTTGTGTGATTCCATGTTaatgtaaaactattttaatctGTCATTTCATTGTCTTGCTCCATAGCACTTACCATATAGTTATTGATTGTTAaagcatatttaattacattgatcaTCACTCTTGTGGAGAAAACAGTGAAATACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70330 lncRNA downstream 758013 33143856 ~ 33144122 (-) True G56265
TU70325 lncRNA downstream 805285 33096584 ~ 33096850 (-) True G56260
TU70324 lncRNA downstream 805905 33095997 ~ 33096230 (-) True G56259
TU70321 lncRNA downstream 863896 33032977 ~ 33038239 (-) True G56256
TU70223 lncRNA downstream 1057799 32844095 ~ 32844336 (-) True G56185
TU70493 lncRNA upstream 72292 34007603 ~ 34008987 (-) False AMCG00009332
TU70494 lncRNA upstream 113876 34049187 ~ 34050160 (-) False AMCG00009333
TU70508 lncRNA upstream 188295 34123606 ~ 34124979 (-) True G56401
TU70553 lncRNA upstream 304173 34239484 ~ 34316008 (-) False G56438
TU70554 lncRNA upstream 304173 34239484 ~ 34304911 (-) False G56438
AMCG00009322 mRNA downstream 897845 33001428 ~ 33004290 (-) True AMCG00009322
AMCG00009321 mRNA downstream 943898 32950616 ~ 32958237 (-) True AMCG00009321
AMCG00009314 mRNA downstream 962160 32928268 ~ 32939975 (-) True AMCG00009314
AMCG00009316 mRNA downstream 998575 32895249 ~ 32903560 (-) True AMCG00009316
AMCG00009315 mRNA downstream 1028861 32852198 ~ 32873274 (-) True AMCG00009315
AMCG00009328 mRNA upstream 8938 33944249 ~ 33948166 (-) True AMCG00009328
AMCG00009325 mRNA upstream 15836 33951147 ~ 33969816 (-) True AMCG00009325
AMCG00009327 mRNA upstream 35530 33970841 ~ 33976806 (-) True AMCG00009327
AMCG00009332 mRNA upstream 72710 34008021 ~ 34026160 (-) True AMCG00009332
AMCG00009333 mRNA upstream 106765 34042076 ~ 34050737 (-) True AMCG00009333
TU69876 other downstream 2717169 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 2916140 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 2954924 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 2964884 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 3244523 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 291963 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 304173 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 1603576 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 1603576 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 1603576 35538887 ~ 35539810 (-) False G56546

Expression Profile