RNA id: AMCG00009332


Basic Information

Item Value
RNA id AMCG00009332
length 2071
RNA type mRNA
GC content 0.55
exon number 16
gene id AMCG00009332
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34007603 ~ 34026160 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtcGTATATGAACACCGGTCACGGTTagaaaaatcattacaaaaagaaaggcTGGAACACAAGAAAGCTAAAGAAGATTATCTTGTATACAAGTTGGAATCTCAACAAACACTAAATAAGGAAAAGcAAGATTCAAACAACAGGGTAAACTCTTTGAACATGCAGCACCAAATGTTGAAGAATCAGCACGAGGACCTAAAGAAACAGTACTACAATCTTCAAGAGCAGCACCAGGCCCTGGGAGAGGATCACAGCAGAGCAGTGAAcgaacacaaacagaaatatgacGGCCTGCAGCAAGTCAAGGAGATGGAAATATCCAAATTGAAAGAAAACATCTATAACCTGCGTGAGGAGAACAAGCAGCTGAGGAAAGCTCACCAGGATGTGCATCTGCAGCTGCAGGATATGAGGGTCCAAGTGGAGGAATTTAAGCAGCTTAAGGAAACCCTCAACAAGATGCCCAGTTTCAGACAGCCCGAGCAGGGCCAGAGGCAAGAGCGACAGGGCAGCCCCGAGGAAGCGCCACAACACACCAAACACGCTGCTCAGCAGGCTGAAGACCTTGCTAATGAGCTCCCAGATCGGGGGGAGCATGCCGAGCAGCAGCGCTCTGAACTGTCCCAGCAGCAGGTGGTCGCGGCCCAGCCTGAGAGAGCCCAGGCCCCCGAGGATGACCAGGTGCCCGGGCAGGAGGAGGAGCGGCGGCGGGAGCTGgcggaggaggagatggagcagGCGGGGCAGCCGGAGCACCTGGAAGAGGACTCTGAGCAGCCTCAAGaggaggcagaggcagagagaaaggaCAGGAGACAGGAGCCGGAGCAAGCCCAGCCAGAATCCCAGTGGCACCAAGCAGAAAACACGGACCAGAAGCAGCCAGCCATGcagcagcagccgctgCCACAGGAGGATCTTGGGAAGTCGGCGTATGAGcagcagctggagcagcagaGGCTGGTGGCCCGGCGGGCGGAGGAGTCCCGGCAGCTGAGGGAGCGGCAGGAGTCCCTGCGCCTGCAACGGCTGAAGGAGCACCAGGACCGGCAGCAGCAGCTCCGCCAGAGGGAGACTCTGCTGCAGAGGGACGCCGACCGGCGGGAAGAGCTCCTCCGAGAGCAGCAGCTCAGacaGAAGAACCAGTATGAGCACTTCGATGCCGACATTGTCCAAGGTGACGAAGAACAGCACAACGGAGAAGATGAAGAGAAAATCCCACAATCCCATCACGAGGATGAGGACAAGCAGGCAGAAGGTGATCATGAGCAGCATCAGGAACCGAAGCCTGCAGGGGAAGACTTGAACCCAGAGGACGACCCAAACAACCAGGGCGAGGACGAGTTcgaggaggcggaggagcaACAGGAGGAGAACGCTCCCGACAGGAAGGAGGAGTCCAGGGCGGCGGACAATAGAGCCGGCCCAGTGGTGGAAGACCAGCTAGTGATGGCTGGAAACCCAGACCAACAGGAGGACAACTTGGATGAACAGTAccaggaggagggagaggaggaggtaGGAGAGATGGGCAGGGGCCATGATAGGGTCGAGGGCCAGGATGACTTGCCAGAAGAACATaagcaagagagggagaggaatgaAGAAGACCCGTACAACGAAGAGAACGACGAACAAgaAGATGTGAAGGCTCATGAAGGTCCACAGAAGGAAGAAAAACTCCCTGCAGAAGAGCAGCCAAAACGAGAGTCTGAAGTAAATGAAGAAGAGAACTatgaggaggacgaggaggaagaggaagaccGGGGAGCCCGTGAAGCCCACCCCATCCGCCGTGCGGAGATACAGCTGCCAAAGATCCCTCAAATACAACACCTGTCCCTGGCGGAAAACAACATCGCAACACTGCACGACCTGTCGGAGCTCGGGACGTCCCCGCTGGAGTCCCTGACGCTGAAGAGAAACCCGTGTGAATTTCAGGAGGACTATCGCTCACAAGTGTTCTCTAGTTTGCCAAAACTCAAACTTCTGGATGGAATCCCAAAGCTGCCATCAGACTGCTTGCCTTCGGAATCTACCACGGCTTCCAGAATGTGTATAATTCTATAA

Function

GO: NA

KEGG:

id description
K23540 GOLIM4; golgi integral membrane protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70330 lncRNA downstream 863899 33143856 ~ 33144122 (-) True G56265
TU70325 lncRNA downstream 911171 33096584 ~ 33096850 (-) True G56260
TU70324 lncRNA downstream 911791 33095997 ~ 33096230 (-) True G56259
TU70321 lncRNA downstream 969782 33032977 ~ 33038239 (-) True G56256
TU70223 lncRNA downstream 1163685 32844095 ~ 32844336 (-) True G56185
TU70494 lncRNA upstream 23027 34049187 ~ 34050160 (-) False AMCG00009333
TU70508 lncRNA upstream 97446 34123606 ~ 34124979 (-) True G56401
TU70553 lncRNA upstream 213324 34239484 ~ 34316008 (-) False G56438
TU70554 lncRNA upstream 213324 34239484 ~ 34304911 (-) False G56438
TU70572 lncRNA upstream 331113 34357273 ~ 34359038 (-) False AMCG00009347
AMCG00009327 mRNA downstream 31215 33970841 ~ 33976806 (-) True AMCG00009327
AMCG00009325 mRNA downstream 38205 33951147 ~ 33969816 (-) True AMCG00009325
AMCG00009328 mRNA downstream 59855 33944249 ~ 33948166 (-) True AMCG00009328
AMCG00009326 mRNA downstream 72710 33902135 ~ 33935311 (-) True AMCG00009326
AMCG00009322 mRNA downstream 1003731 33001428 ~ 33004290 (-) True AMCG00009322
AMCG00009333 mRNA upstream 15916 34042076 ~ 34050737 (-) True AMCG00009333
AMCG00009331 mRNA upstream 45676 34071836 ~ 34076094 (-) True AMCG00009331
AMCG00009339 mRNA upstream 113946 34140106 ~ 34169068 (-) True AMCG00009339
AMCG00009340 mRNA upstream 172055 34198215 ~ 34212174 (-) True AMCG00009340
AMCG00009341 mRNA upstream 193905 34220065 ~ 34221427 (-) True AMCG00009341
TU69876 other downstream 2823055 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 3022026 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 3060810 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 3070770 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 3350409 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 201114 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 213324 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 1512727 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 1512727 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 1512727 35538887 ~ 35539810 (-) False G56546

Expression Profile