RNA id: AMCG00009336



Basic Information


Item Value
RNA id AMCG00009336
length 1245
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00009336
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34119086 ~ 34121611 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGTTCCCTCCTGAGGTGTGCTGGAAGTGGCTGGAGCTGCACGACTCAGTGTCTGTCCACGCGTCTGAGAAGAAGATCCGGAGATCGGCTGTCCTGAAGCAGTGGCAGATACAGAGGTGGCCTCGCCTGCAGTCAGGTCACCACTGCACCGCCCTGGACCAGAGAAAGCTTCACCGTGCTGCCTGGGCCGGCTGTGAGGAGCAGGTTAAAGCACTCCTGTCCGAGGGCGTCCCTGCAGATTGCCAAGATTCCCAGGGTTGGACAGCTGTGCACCATGCGGCATTCTGTGGCCACCTGCCCCTGGTGAAGTTCCTCCTGCACAGAGGCATTGATATCAACAGCAGGGACTTCTTCAGCTGCACCCCTCTGCACAGGGCGGCATGGAATGGGCAGGCGGTCACGGTGGAATACCTCCTCCAGCTCAGGGCTTCGCAGGAGATCCGCACATGCTCAGGACAAACTCCACTACACCTGGCCGCAGCCAACGGCCACCTCGACACCACACAGGCCCTGCTGAAGTACAAGGCCCCGGTGGACTCCACAGACATCAACAAGTGGACTCCGCTGCACTGGGCCTCGTTCGGTAGTAAGTGCGAGGTGGTGGATCTGCTGCTGAGCTGTGGCGCTGCGCTGAATGAGAGGGACAGTAACGGTATGAGCCCACTTCTTCTCGCAGTGCTGGCTGAGAGCCCACGCAGTGTGGAGCTCCTGCTCAGCAGAGGTGCCGACATCAACACAAAGAGCAACAATGGTCAGACCGCCTTGCACCTCTGCGCAATATCAGGAAATAAGAAGATCATACAACAGCTGCTGACAGGAGGTGCCAAGGTTGACACGGTCGACAAAGACCTTGTCACCCCCTTGCATCTCGCGGCAGGATGTGGCTCCTGTGTTGCCGTGCATCTGCTGATCCTGCACGGGGGTGCGCTGAACGCCAGAGATGTGATGCAGATGACTCCCCTGCACTACGCCGCTTTGAAGAGCAACGTTGAATCGGCCAAACTCCTGCTGCACTACGGAGCAGATGTGAACGCGGCCGAGAGGCTTGGGAAAACTGCTCTGCACTTGGCATCAGAGAGAGGCCACGGCAAAGTGCTGAAGCTTCTGCTGGACAGTGGGGCCGATGCCTCCCTGAAGACGCACTGGAAGGAAACGGCCACTGACATTGCTTTAGAAAATAAGCAGCCAAAAGCTCTGGAGATTATTCAAGGGTACAAGAAGCCACAGCCTCGGTCCAGAGCa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU70484 lncRNA upstream 40247 34045490 ~ 34078839 (+) True G56379
TU70463 lncRNA upstream 76827 34038134 ~ 34042259 (+) True G56376
TU70350 lncRNA upstream 661914 33456891 ~ 33457172 (+) True G56282
TU70333 lncRNA upstream 837322 33281537 ~ 33281764 (+) True G56268
TU70327 lncRNA upstream 1009067 33109739 ~ 33110019 (+) True G56262
TU70574 lncRNA downstream 241888 34363499 ~ 34368674 (+) False AMCG00009345
TU70575 lncRNA downstream 241888 34363499 ~ 34366719 (+) False AMCG00009345
TU70601 lncRNA downstream 461336 34582947 ~ 34662345 (+) True G56474
TU70625 lncRNA downstream 841143 34962754 ~ 34963224 (+) True G56495
TU70631 lncRNA downstream 898623 35020234 ~ 35067229 (+) True G56501
AMCG00009338 mRNA upstream 11072 34092726 ~ 34108014 (+) True AMCG00009338
AMCG00009337 mRNA upstream 28120 34080494 ~ 34090966 (+) True AMCG00009337
AMCG00009334 mRNA upstream 50515 34063564 ~ 34068571 (+) True AMCG00009334
AMCG00009330 mRNA upstream 113439 34001523 ~ 34005647 (+) True AMCG00009330
AMCG00009329 mRNA upstream 118013 33991608 ~ 34001073 (+) True AMCG00009329
AMCG00009335 mRNA downstream 3418 34125029 ~ 34133695 (+) True AMCG00009335
AMCG00009343 mRNA downstream 98961 34220572 ~ 34254089 (+) True AMCG00009343
AMCG00009346 mRNA downstream 234128 34355739 ~ 34362436 (+) True AMCG00009346
AMCG00009345 mRNA downstream 241808 34363419 ~ 34369257 (+) True AMCG00009345
AMCG00009349 mRNA downstream 277504 34399115 ~ 34430416 (+) True AMCG00009349
TU70453 other upstream 87641 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 100271 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 1953721 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 4123648 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 4207522 29907911 ~ 29911564 (+) True G55573
TU70668 other downstream 1267303 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 3238490 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 3488732 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 4320644 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 5313289 39434900 ~ 39436995 (+) True AMCG00009480

Expression Profile