RNA id: TU70548


Basic Information

Item Value
RNA id TU70548
length 664
RNA type TUCP
GC content 0.47
exon number 6
gene id AMCG00009342
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34227274 ~ 34274084 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgtccAATCTATatcttaatatttgtttaacccATATATATACAGGAAGCTTTTTTTCATATGAACGTTTTGAAAGAGTATTTTTTTGTCTTCGTCTCGCAGAGATTGTCAGAGCAATGACATACGTGATAAACCAGGGCATGTCAATGTACTGGGGAACCTCGAGATGGACTGCAATGGAAATTATGGAAGCCTATTCCGTGGCGAGGCAGTTTAATATGATCCCGCCAGTGTGTGAACAGGCCGAGTATCATCTGTTCCAGAGGGAGAAGGTGGAAGTGCAGCTTCCAGAGCTGTACCATAAAATAGGTGTGGGGGCGATGACTTGGTCTCCCCTAGCCTGTGGCATAATCACTGGGAAGTACGAGAACGGAGTGCCAGAGACCTCCAGGGCATCCATTAAGTCCTACCAGTGGTTGAAAGATAAAATACTGAGCGACGATGGGAGACGGCAACAAGCTAAGCTAAAGGAGCTTTCCCACATAGCAGAGAAGCTAGGCTGCACCTTACCTCAGCTGGCAGTGGCTTGGTGTCTGCGTAACGAAGGTGTGAGCTCCGTTCTTCTCGGCACATCTAATCCTGAGCAGCTTACAGAAAACCTGGGGGCTATACAGgtaCTTCCAAAGATGACATCTCACATAGTCACGGATATCGATCACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70508 lncRNA downstream 102295 34123606 ~ 34124979 (-) True G56401
TU70494 lncRNA downstream 177114 34049187 ~ 34050160 (-) False AMCG00009333
TU70493 lncRNA downstream 218287 34007603 ~ 34008987 (-) False AMCG00009332
TU70330 lncRNA downstream 1083152 33143856 ~ 33144122 (-) True G56265
TU70325 lncRNA downstream 1130424 33096584 ~ 33096850 (-) True G56260
TU70553 lncRNA upstream 10095 34239484 ~ 34316008 (-) False G56438
TU70554 lncRNA upstream 10095 34239484 ~ 34304911 (-) False G56438
TU70572 lncRNA upstream 127884 34357273 ~ 34359038 (-) False AMCG00009347
TU70644 lncRNA upstream 931202 35160591 ~ 35160877 (-) True G56513
TU70646 lncRNA upstream 943487 35172876 ~ 35173249 (-) True G56515
AMCG00009341 mRNA downstream 5847 34220065 ~ 34221427 (-) True AMCG00009341
AMCG00009340 mRNA downstream 15100 34198215 ~ 34212174 (-) True AMCG00009340
AMCG00009339 mRNA downstream 58206 34140106 ~ 34169068 (-) True AMCG00009339
AMCG00009331 mRNA downstream 151180 34071836 ~ 34076094 (-) True AMCG00009331
AMCG00009333 mRNA downstream 176537 34042076 ~ 34050737 (-) True AMCG00009333
AMCG00009344 mRNA upstream 46878 34276267 ~ 34278095 (-) True AMCG00009344
AMCG00009348 mRNA upstream 81440 34310829 ~ 34333009 (-) True AMCG00009348
AMCG00009347 mRNA upstream 104872 34334261 ~ 34362341 (-) True AMCG00009347
AMCG00009350 mRNA upstream 213224 34442613 ~ 34448638 (-) True AMCG00009350
AMCG00009353 mRNA upstream 263742 34493131 ~ 34493816 (-) True AMCG00009353
TU69876 other downstream 3042308 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 3241279 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 3280063 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 3290023 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 3569662 30602579 ~ 30657612 (-) False AMCG00009265
TU70552 other upstream 10095 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 1309498 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 1309498 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 1309498 35538887 ~ 35539810 (-) False G56546
TU70712 other upstream 1642734 35872123 ~ 35872597 (-) True G56568

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025766 True 2273 mRNA 0.43 12 NC_007129.7 34478959 ~ 34536067 (+)