RNA id: AMCG00009345


Basic Information

Item Value
RNA id AMCG00009345
length 1764
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00009345
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34363419 ~ 34369257 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTTTGGTCCTCTTGGCATACACTACTGCAAGGGCGGAGTAACAACTGTAGTTTTTATGATTGGAAACAAAATGGCAGCACAGGATCCGCCCGCTGGACAAACGCAAGATAAGACCGAAAGCGGAAGCAAACAGACTACAAACATTGTCGCCAAACTATCCCAGTTTGCAGATGACCACATAACCATTGTCAGGAACATCAGTACAGGACTTGCAGTTGCTGGGTTAATAATACTGGCCAGGAGTATAAAACTGGTTACAAAATTTGGTGCAGCTTCAGAAATACCAGTGAAATTTATAGAAAAGAATGTTAGTCTTCGAGGAAAATTTCACCATGTCACAGAGAATGGAATAGGAGTGGAGCATATTCCAATTAGTGTTCCAGTGATATCTCGCCTGGTGAGACAAAgGCCATCAAATGCACTCCTGCTCATTCGGCTGGCTGGAGTAGAACTCACAGAGGAAGGCAAGACCTGGTTAAAACACCAGTTAGAGCCATCAGAGTTTTTGTGGTTTAAACTTATTGGAAGACAGAATGACATACTGGACTGTCTTGTCTCTGTGAACAGGGGAGGTGTATTCAGCATGTCCCTGAATGAGGAGATACTAAGACAGGGGCTGGGGAGAACTGTCCCCATCGACAGCCTGGCTCATCAGTACAGACTGCACTGGAAGGTCCACAGGAGGCTGCTTCGAGCAGAGGGGAAAGCTGAGAAGAAAGGCAAAGGCCTATGGAAGCAGCAGAATTTGCGGGAGCGCATCTcagcatatttaaatgattacaaAATGTTGAGACTTTGGAAGAAGCTATTAAAGCGAATTTGGTGACTAAGGACAACCACCTGTTCTTCATCAATAGAACAGACCCACTCCACAGACACTGTTTCCGATTCATGTCTTATTTATCTGGAAGCTAATTATATGGTAATGTATGAGCTCTACGCTctgcctttttgtttgtgtcttcaCACATTTCAATTCTTATGGATGAACAGGAGGAGCAATACTTCAGGGGTCTGACAGAATGGGTAATCAGGCTTTAATTAgtataataaagaatacatataTTCTGGGAGGAGTGAGGTTTTTGTCGTACCTTGTCTTTCTAGTGATACACACTTTAAAAAAGCTACAAATCCTTCAGCTGTGATAAATGTATAACAAGCTTGTTTTGAAGGCTCTTCTTCTAGGTTATGTCCCAGGAGATACAGCAAATACTGACCTTTAGCTCCCTCACACTATTTATATCAATACTGTAATGTAGTTTTCTTTATAGAAAGAGGAAAATGTGGTttatagtctctctctctctctgatattATAAATGCTACACAGTAATGACAATACAAAATAGGACATGTGCCTTCCACTAtatcacaatttatttatatgcaaacGTCTTTTAAGGTCTTACAGTccatcatttagttttttcgGAGGGCCCAGGATCCtaatcttttcttcttcttttctcatAAGCATTGAGTATTTTGAGTGTTGCTTTGTCACAATGATTTGCTGTGAAACTATAAGTGCCCCCACTGAGTTCAGTCACAAAAAACATGGTTTCCATGGCAGCACCAAATCCAAAAGCTTGAGGCACATCAAAAGGTGAAGCCAAGACGTTTTTTAGAGATGTCTAAGACCAAGGAAAGGATAtcgatgaaaaaataaacattatttatagaataaagtttttttttaatcattcaaaatttatgaacagaacaaattatccctgtgtctgtttgttgtccatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70484 lncRNA upstream 284580 34045490 ~ 34078839 (+) True G56379
TU70463 lncRNA upstream 321160 34038134 ~ 34042259 (+) True G56376
TU70350 lncRNA upstream 906247 33456891 ~ 33457172 (+) True G56282
TU70333 lncRNA upstream 1081655 33281537 ~ 33281764 (+) True G56268
TU70327 lncRNA upstream 1253400 33109739 ~ 33110019 (+) True G56262
TU70601 lncRNA downstream 213690 34582947 ~ 34662345 (+) True G56474
TU70625 lncRNA downstream 593497 34962754 ~ 34963224 (+) True G56495
TU70631 lncRNA downstream 650977 35020234 ~ 35067229 (+) True G56501
TU70674 lncRNA downstream 1169630 35538887 ~ 35539780 (+) False G56541
TU70675 lncRNA downstream 1169630 35538887 ~ 35539780 (+) False G56541
AMCG00009346 mRNA upstream 983 34355739 ~ 34362436 (+) True AMCG00009346
AMCG00009343 mRNA upstream 109330 34220572 ~ 34254089 (+) True AMCG00009343
AMCG00009335 mRNA upstream 229724 34125029 ~ 34133695 (+) True AMCG00009335
AMCG00009336 mRNA upstream 241808 34119086 ~ 34121611 (+) True AMCG00009336
AMCG00009338 mRNA upstream 255405 34092726 ~ 34108014 (+) True AMCG00009338
AMCG00009349 mRNA downstream 29858 34399115 ~ 34430416 (+) True AMCG00009349
AMCG00009355 mRNA downstream 133391 34502648 ~ 34503259 (+) True AMCG00009355
AMCG00009357 mRNA downstream 268271 34637528 ~ 34677384 (+) True AMCG00009357
AMCG00009360 mRNA downstream 320501 34689758 ~ 34690484 (+) True AMCG00009360
AMCG00009361 mRNA downstream 350754 34720011 ~ 34720679 (+) True AMCG00009361
TU70453 other upstream 331974 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 344604 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 2198054 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 4367981 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 4451855 29907911 ~ 29911564 (+) True G55573
TU70668 other downstream 1019657 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 2990844 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 3241086 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 4072998 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 5065643 39434900 ~ 39436995 (+) True AMCG00009480

Expression Profile