RNA id: TU70575



Basic Information


Item Value
RNA id TU70575
length 482
lncRNA type sense_over
GC content 0.44
exon number 4
gene id AMCG00009345
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34363419 ~ 34369257 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACAGGATCCGCCCGCTGGACAAACGCAAGATAAGACCGAAAGCGGAAGCAAACAGACTACAAACATTGTCGCCAAACTATCCCAGTTTGCAGATGACCACATAACCATTGTCAGGAACATCAGTACAGGACTTGCAGTTGCTGGGTTAATAATACTGGCCAGGAGTATAAAACTGGTTACAAAATTTGGTGCAGCTTCAGAAATACCAGTGAAATTTATAGAAAAGAATGTTAGTCTTCGAGGAAAATTTCACCATGTCACAGAGAATGGAATAGGAGTGGAGCATATTCCAATTAGTGTTCCAGTGATATCTCGCCTGgGCCATCAAATGCACTCCTGCTCATTCGGCTGGCTGGAGTAGAACTCACAGAGGAAGGCAAGACCTGGTTAAAACACCAGTTAGAGCCATCAGAGTTTTTGTGGTTTAAACTTATTGGAAGACAGAATGACATACTGGACTGTCTTGTCTCTGTGAACAGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU70484 lncRNA upstream 284660 34045490 ~ 34078839 (+) True G56379
TU70463 lncRNA upstream 321240 34038134 ~ 34042259 (+) True G56376
TU70350 lncRNA upstream 906327 33456891 ~ 33457172 (+) True G56282
TU70333 lncRNA upstream 1081735 33281537 ~ 33281764 (+) True G56268
TU70327 lncRNA upstream 1253480 33109739 ~ 33110019 (+) True G56262
TU70601 lncRNA downstream 216228 34582947 ~ 34662345 (+) True G56474
TU70625 lncRNA downstream 596035 34962754 ~ 34963224 (+) True G56495
TU70631 lncRNA downstream 653515 35020234 ~ 35067229 (+) True G56501
TU70674 lncRNA downstream 1172168 35538887 ~ 35539780 (+) False G56541
TU70675 lncRNA downstream 1172168 35538887 ~ 35539780 (+) False G56541
AMCG00009346 mRNA upstream 1063 34355739 ~ 34362436 (+) True AMCG00009346
AMCG00009343 mRNA upstream 109410 34220572 ~ 34254089 (+) True AMCG00009343
AMCG00009335 mRNA upstream 229804 34125029 ~ 34133695 (+) True AMCG00009335
AMCG00009336 mRNA upstream 241888 34119086 ~ 34121611 (+) True AMCG00009336
AMCG00009338 mRNA upstream 255485 34092726 ~ 34108014 (+) True AMCG00009338
AMCG00009349 mRNA downstream 32396 34399115 ~ 34430416 (+) True AMCG00009349
AMCG00009355 mRNA downstream 135929 34502648 ~ 34503259 (+) True AMCG00009355
AMCG00009357 mRNA downstream 270809 34637528 ~ 34677384 (+) True AMCG00009357
AMCG00009360 mRNA downstream 323039 34689758 ~ 34690484 (+) True AMCG00009360
AMCG00009361 mRNA downstream 353292 34720011 ~ 34720679 (+) True AMCG00009361
TU70453 other upstream 332054 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 344684 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 2198134 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 4368061 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 4451935 29907911 ~ 29911564 (+) True G55573
TU70668 other downstream 1022195 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 2993382 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 3243624 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 4075536 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 5068181 39434900 ~ 39436995 (+) True AMCG00009480

Expression Profile