RNA id: AMCG00009346


Basic Information

Item Value
RNA id AMCG00009346
length 3723
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00009346
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34355739 ~ 34362436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGGGGAGAAAACAATCTCACGACCTATTCCATGCAAAAGAAATCCCTCTTACGGAAAAGTTCCCACTTGCTTACATGgagttattattagtagtgtCGGTGGTGCAATGAGCACTTAAAGGTGTAATAGTGATGATTGTGTCAGTTACCGATATACGAAACTGGATATGTTTAACGTAGCCTCCGAGCCCATGACTAGACAAAGAATCCGTACCTACTCCATCCTCGTCCGGCGTCCAGGGAATACACCTACGATAATAACCTCTGCTGCCGCATCTCACAGatatCTTGAAGCCAGAATCGGATTGATGTCCAGTAAGTCGACATGGAAATGGCAGGATCAGTCACGCACAAAAATGGAAGACAACGCAAGCATCTTGTTTCTTGGGATATGAAAATCAACGATGGGAAATATGGGACCGATTTAGAAATAGAAGGGGAGGCATTACTCCACGACCCCAACAAAGAAGACGGCCACCCCAAGAGCCGCAAAGGACTGAAATCGGAGCTGGGAAATGTCTCTCTTCTGCTTTTCCTCTATGTTTTACAAGGAATACCCCTAGGCTTGGCTGGGAGTATACCTCTGATTCTGCAGAGCAAAAATGTCAGTTACACAGATCAAGCATATTTCAGCTTTGTCTTTTGGCCCTTCAGTCTCAAGCTGCTCTGGGCGCCTTTGGTTGACGCCATGTACATTAAAACGTTTGGACGCAGGAAGTCCTGGCTTGTGCCAACACAGTATCTTCTGGGATTCTTCATGTTGTATTTGTCCACTTCTGTAGATTCGCTGCTGGAGAGCGATGGCACGAAAGGCCCAGATATTTTCACCCTCACGGCGGTGTTCTTCATGTTTGAGTTCTTGGCGGCCACTCAGGACATAGCAGTGGATGGATGGGCTTTGACTATGTTGTCCAGGGAAAATGTGGGCTACGCGTCCACCTGCAACTCGGTTGGTCAGACTGCAGGATACTTTCTGGGCAATGTGCTTTTCCTGGCTCTGGAGTCTGCTGATTTCTGTAATAAATACCTAAGGTTCGAACCAAAGACTAAAGGAATTGTTACTCTCTCAGattttttgtttttttggggcaTTGTATTCTTGGCCACTACAACATTGGTTGCTCTTCTGAAGAAAGAAACCAGTAAAAAGTCGAAAGAAGAGAGACAGGGAGTCATGGACACCTATAAACTGCTCTTTTCAATTATCAAGATGCCAACAGTTCTGACATTCTGTGTCCTGCTACTTACTGCTAAAATGGGGTTCTCTGCTGCTGATGCTGTAACTGGGCTGAAGTTAGTAGAAGAAGGTGTACCAAAAGAACAACTGGCCCTGCTGGCAGTGCCTATGGTCCCTCTGCAGATCCTCCTACCTTTGATAATCAGCAAATACACTGCAGGCCCTCGACCACTGGACATTTTTTACAAAGCCTTTCCTTTCAGGTTACTGATTGGACTGGAGTTTGCTTTGCTAGTGTGGTGGACTCCCAGTGTAAAACACGATGGAGGATTCCCAGCTTATTACTATATTGTGGTTCTGATAAGTTATGCTGTGCACCAGGTTTCCTTATATAGTATGTATGTAGCTGTCATGGCATTTCATGCTAAAGTTAGCGATCCCATAATTGGCGGCACATACATGACTCTCTTAAACACGGTTACCAACCTGGGAGGAAACTGGCCATCTACTCTGGCTCTGTGGCTGGTGGATCCACTCACAGTGAAGGAGTGCCAAGGACCTTCAGGGCAGAGCTGTGGATCTGCAGAAGAAGCCGGGCTCTGTGCAAAGCTGGGAGGGTCATGTGTGACCACACTGGATGGCTATTATGTGGAGTCCGTTATCTGTGTCGTCATTGGCTTCGGGTGGTGGTTCTGGTTTGGGAATAAGATAAAAAAGATACAGGATGAGAAACCATCTGCGTGGCAGTGCAAGACTTCCAAATAACCACCGTTCACCATTCTTTCTTCATTCAGGCTTTAATAGTGGTTAAACCACTGCTGGTACTGAGTGAATACAAGGGACTTAAACTGCTGAAATGAAATCTGTGTATCTCCGATACTCTTCAccacaatgtatatttttttgatttacGGTCTTACAGCCACACCAGTCCGTttctatgttgttgttttttttatcatcacctgttgctgtgaaataaaaatgtcagagTCACATTGGTGACTAGTTAGTCAACCCCCTTTTTTTCTGCTCTTTTTCTCCATTGATATGAAAGTGGAGCGGAGAGGTCAAATTGCTTCCACCTTAGTTTCTTCTATAGAATAAAGGATGGTGCTTAACACTATGGAATTATCCTTTCCTCTCTGGCATGTTTTGCCTAATTaggttatttcttttttaaattacagtatattatGCTTCAGTGAAGATAATTACTTTTCAGCCTGTATTAAATGGTTAATCAATATCgctattttcagaaatgtcgcccactcttatttttttgtgttacatgtgccttgtttttgaaagtttaAACATCCGTTATGAAAACGGATTAACATCTTCAAAACCATTTACCTGTTAAACACATGTATCCCCCCTTCCATGCTATAgttcaataatataaaatgctgtTCAGTCCAACCTATATAtgttatatgtgtatatgttatTGTCTGGTGTTAATACGTAAGattgattttacatttgtgaACTAACAGAAAAAATCGATTTGCAGCAATAAgatgttataaaatataaatgttgaatcttttaaaaatatatatttttaaaagtaacagtATTGCTTAATGTTTATGCACtgataattgaaatgtataggGAACAGCATTCTCCATATGTTGGGCTAGATGGCCCTCGAAGATATttgtttgttctatttttttttatggttaggaattttacatttctgagaATAGCAATATACTATATAcgatttttttaaaaaaaaattaaacatttgtgcAAAAATTAGCCATACTGTTTCAGCCactttgttagtgttttttgtctgtgtcaAAGTGACAATACTTTTTAAAGATGGCCTTGAAAGTGATTCAGTTAAGTATCTTATGATCTATTTAAATGACGAGTGGATTGTATCAACCTCAACAGCTCCATTAGTTTAAAGTTGtaagattgtttattttgtaattatttaccaaattattgatttaatttaattcaatatttaaaaaataaagaattgaatACTCaatcagtttttttattatttaaaacatcaaaacatattttttattttaactgtttatGGAATGTCACCTTTTGGCTATGATTCTGCAGAAAGTCTAATAAACTGGGTACTTTTAAGGAAGATTCAGAGCATTGCTGTTCAGGATCAGATTTCTGCTCTAATGAGCTTTGGCCTTGTGCAATGCTGCTGTTATTGGCATTGTAACTTTGTTGAATTATGAACACGGTGTTTAATTGGTTAGTTTTTAGGTGGTGAAGAGTGTCTATTCTGTAATCAGTACCAGATGAGTTATACATtaattgtacagtatataatttgtatataagCTATGCTGTAAACAGTTCTAAAGAACTTTTCTACCAACAttcatgaaatgtaatattaacaaGATTTAATACATATCCtatatgtaataaaatgcaaagtatatTCCTGTCtccatttttttctgttttatgttcaaattattattggttttgtgTAAGAAGTGTAGGAAGGTTatgcattaaatatttgaaggCCCT

Function

GO:

id name namespace
GO:0021955 central nervous system neuron axonogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008521 acetyl-CoA transmembrane transporter activity molecular_function

KEGG:

id description
K03372 SLC33A1, ACATN; MFS transporter, PAT family, solute carrier family 33 (acetyl-CoA transportor), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70484 lncRNA upstream 276900 34045490 ~ 34078839 (+) True G56379
TU70463 lncRNA upstream 313480 34038134 ~ 34042259 (+) True G56376
TU70350 lncRNA upstream 898567 33456891 ~ 33457172 (+) True G56282
TU70333 lncRNA upstream 1073975 33281537 ~ 33281764 (+) True G56268
TU70327 lncRNA upstream 1245720 33109739 ~ 33110019 (+) True G56262
TU70574 lncRNA downstream 1063 34363499 ~ 34368674 (+) False AMCG00009345
TU70575 lncRNA downstream 1063 34363499 ~ 34366719 (+) False AMCG00009345
TU70601 lncRNA downstream 220511 34582947 ~ 34662345 (+) True G56474
TU70625 lncRNA downstream 600318 34962754 ~ 34963224 (+) True G56495
TU70631 lncRNA downstream 657798 35020234 ~ 35067229 (+) True G56501
AMCG00009343 mRNA upstream 101650 34220572 ~ 34254089 (+) True AMCG00009343
AMCG00009335 mRNA upstream 222044 34125029 ~ 34133695 (+) True AMCG00009335
AMCG00009336 mRNA upstream 234128 34119086 ~ 34121611 (+) True AMCG00009336
AMCG00009338 mRNA upstream 247725 34092726 ~ 34108014 (+) True AMCG00009338
AMCG00009337 mRNA upstream 264773 34080494 ~ 34090966 (+) True AMCG00009337
AMCG00009345 mRNA downstream 983 34363419 ~ 34369257 (+) True AMCG00009345
AMCG00009349 mRNA downstream 36679 34399115 ~ 34430416 (+) True AMCG00009349
AMCG00009355 mRNA downstream 140212 34502648 ~ 34503259 (+) True AMCG00009355
AMCG00009357 mRNA downstream 275092 34637528 ~ 34677384 (+) True AMCG00009357
AMCG00009360 mRNA downstream 327322 34689758 ~ 34690484 (+) True AMCG00009360
TU70453 other upstream 324294 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 336924 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 2190374 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 4360301 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 4444175 29907911 ~ 29911564 (+) True G55573
TU70668 other downstream 1026478 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 2997665 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 3247907 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 4079819 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 5072464 39434900 ~ 39436995 (+) True AMCG00009480

Expression Profile