RNA id: AMCG00009349


Basic Information

Item Value
RNA id AMCG00009349
length 5768
RNA type mRNA
GC content 0.45
exon number 21
gene id AMCG00009349
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34399115 ~ 34430416 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAAAGATGCATGAGTGTTATGCAGTCTGGGACCCAAATGATCAAGCTGAAGAATGGATCAAAGGGGCTGGTCCGCCTTTTCTACTTGGATGAGCATCGATCCTGCCTCAGGTGGAGGCCCTCACGGAAAAGCGAGAAGGCAAAAATTACCATTGATTCCCTGTATAAGGTCACAGAAGGCAGGCAGTCAGAAATCTTCCATCGCCACGCTGATGGGAACTTTAACCCCAGCTGCTGCTTCACCATCTACCATGGCAATCACATGGAGTCTCTGGATTTGGTGACCTCGAACCCAGAGGAGGCCAGGACATGGATCACTGGACTCAAGTACTTGATGGCTGGAATCACTGACAAGAATGGAGATGGTCTGCTGAACATTGAAGAGATCTACCAGCTGTTACATAAGATGAATGTGAATCTGCCTCGCAGAAAAGTCAGGCAGATGTTTCAGGAGGCGGACACAGACGAACAACAGGGAACCCTGACCTACGAGGAGTTCAGCGTGTTCTACAAGATGATGTCTCTCCGACGGGACCTGTTTCTGTTGCTCATGTGTTTTAGTGACAAGAAGGATCACCTCACTGTGGAGGAGCTTGCGCACTTCCTCAGAACTGAGCAGAAGATGAACAATGTGACAACTGAATATTGCCTGGATATAATCGATAAGTTTGAAGTctctgaagaaaacaaagagcAGGATGTACTAGGTATTGATGGGTTCACCAGTTTCATGCGAAGCCCAGCTTGTGATGTATTCAACCCGCTCCACCAGGAAGTCAACCAGGACATGGACCAGCCACTGTGTAATTACTTCATTGCTTCGTCTCACAACACCTATCTCACTGGAGACCAGCTCCTCTCGCAGTCCAAGACTGACATGTACACCTGGGTCCTGCAGGCGGGCTGTCGTTGTGTGGAAGTTGACTGCTGGGATGGCCCTGACGGTGAGCCAATGGTGCAACATGGATACACGCTAACATCGAAAATATCCTTCAAAGCTGTGATCGAAACCATCAACAAACATGCCTTTGTGAAGAATGAgtatccAGTCATCCTTTCAATTGAAAACCACTGCAGCATCCAACAGCAGAAAAAGATAGCCCAGTACCTGAAGGAAATATTTGGAGAAAAGTTGGATCTTGGCAGAGTACTGACTAGAGATTCCAAAGAGCTCCCTAGCCCGAACAACTTGAAGGGAAAGATCCTCATTAAGGGCAAAAGGCTGCCGCCATACCTCGCTGCTGATGCGGAGGAGGGGGAGGTGTCAGATGATGATAGCGCTGATGAGATCGAGGATGATTTCAAACTCAAGCACAGCAGTAGTAATGGAAAAAGTGATCACCAGGTGGAATCTTTCATAAGGAAGAAACTAGACTCCTTGTTAAAAGAATCACAGATTGGAGACAAGGAGGATTCAGACAGCTTTTCTATAAGGGCCTTGTTGAGAGCAACGCATGAAGGTTTAAACGTGAATCTTAAACCGAACTCCTGTCTTAAAGAAAGTGGAAAGAAATCTCAAAGCCGTTCCTTCATAagtttttcaaaacacaagAAACACGGGAAGTCCCGAGCGAAGTCTCAGAGCACTGACATCGAAGAGGAAGGACAGCATGAGGCATCAGGGAAAGATGCGGGACAGTCCTACAGAGCGGGCCGTCGGCGAAAGACCATGAAGCTCAGTCGTGATCTCTCAGACGTGGTAGTTTTCACCAACTCGGTCGCCTCGCAGGACATTCTTGACGAAGGGACTCCTGGAAACGTCCTGTCCTTCAGCGAGATCAGAGCCCACCAACTGGTACATCACAAACCTGAACAGTTTATCTTGTTCAACCAGAAGCAGCTCTCTCGAATCTACCCGTCTGCATACAGGATAGACTCCAGCAATTTTAACCCTCAGGCTTACTGGAACGTTGGATGCCAGCTGGtgGCTTTGAACTATCAGACTGAAGGTCGGATGATGCAGCTCAACAGGGCTAAATTCATGGTGAATGGTAACAGTGGCTATGTTCTCAAACCCCAGCCAATGAACAAAGGTTCTTTCAACCCATTCTCTGATGACCCCCTTCCTGCTTATCCTAAGAAACAGCTTGTTCTGAAAATAATCAGTGGCCAGCAGTTACCAAAACCTCCAGACTCAATGCTGGGCGACAGGGGAGAGATAATTGATCCCTATGTTGAGGTAGAAATCATTGGTTTGCCTGTTGACTGCTGCAAGGAACAAACCAGAGTTGTTGATGATAATGAACTGGCTCTGGTGCGCTTCCTAGTCTGGGACCATGACCCCATTGGACGAGATTTTGTTGGCCAGAGGACTGTGGCATTCTGTAGCTTGATGCCAGGTTACCGCCATGTGTATTTAGAGGGCATGACAGAATCCTCCATCTTCATTCAAGTAATGGTCAATGATATCTATGGGAAGGGCAGGCAGCTAAGAGGAATCAAGGGTCTTTTTAACAAGAACCCCAAGAACGGCTCGGTGGACACCAACTCTGGTTTTCAAATCCGCAAGCGCTCCATCAGTGACCACATACTACGCCGCACGGCCAGTGCTCCCGCCAAGGGcaggaagaaaactaaaatgggCTTTGCTGAGCCGCAGTGTGAAAGAAAGGACAGCGAACCAGAGCTGGAGAGCAAAAATGCCATGGAGAGCCATAGACCTAAGAGCTCACTGCACAGACCGGTTTCAATGCCTTTGGAAAAGTTGCTTACGGGAGTCCTTGAACTGCCaacaaatgaaactgaaaaagtcTCAGAGGACAATGATACGCACTCTGGAAACTTATCTTCTGAGACAGGCCGATTGTGCAGCGTAGAGCGACTTAGGTCTGTCTCCGTGGACCTTCTCTTTGAAACATACCCTTCCCTCCAGTCTGAAGATCGGATGCTCTCCAGTAAAGCGCCATGGGAATCCTCCTTAAGGGTTCCTGTCAAAACTTCCGAAATGGAGAAAGTATCTTACCTTGAAATTGGAGGGAAAAGCAGTGAGGAGTGTTTCGATGCCCCACCTCCAAACGAAGAAAACGTCTCTTTCGACGAGGAGGTTTTCAACGATGACAGTTCTTGTAAAAAAACTATCTGGAGCCAACCCAACATCCCAGAAACCACACCTGAGCACCTGGTATCTACTAAAGATGGACCAGAGGACCACAGTTCTGAACATATACAGGCAGAACTACTGCGAAAAAGAGGTGCAATTTTAAACCATATTACAAATGTCCCATTGTGTTCTGTGTCTTCTGTTGATGTGTCGTCAATCCTCTGCATGGAGAAATCAGAACTCCAGTCACCTTACAAATCAATGCAGGAGAGCACCATCTCCCGGCTTATCGATAACGTTTCtttggacaatgagaatgaCACATGTGGCTCAATCTCAGCATTAATTGGCCAGTTTGATACTACCCATGACCAGAGCAACCTTACTGTTGTTTCCAGCATTCAAGGTACTAATAATCACACATTTAGCATAATGTCAGGTTTTTCAAGTACTTTGATATGGGAGCCTAATACACCCCAGAAACCCTGCCTGCCAAGTAAGACCAGCAAAGATGCTTTTCTTGATGCAACATCTGACACAGCTGTGTTCTCTAGCCCGGAGACAACAGATCAATCTGTTTATACCATCCTTAATGAAGACTTCCTGTCACCTACATCTGTATATAATCTTCGAGACCAAACAATACGGAGTATGCAGAttaattcagaagaaaatacacCTGTCGGCAGTTCCTGTACGACCCCTCTGAAAAGCTTCAGTCCAAGACTACGTTCAGATGAGAGAGCCGGTTGGGGACCACAAGGGATTTGCAGCTCAACAGATCGCACTACTTCTGACAAGTTTCTTGTGTTTCCAGACTCTGCCAGCAGCAGCTTAATGGAAGTTGAGGTTAATGTGGATGATGACTCGCAGGACATCACATTGACCTCAACTTGTGCAAACAATCAGTGGACAAGCCAAAGCCCATCACCCTGTAGTGATTCACCACATGACTGGCCCTTAAACAACAGTATGTACCACAACAGCTACCATGTGCCAGATATCAGGCCTGAGAACATTTATCGTAATCATGATGTCTACAGAGGCCTACAAGACCAAAGCTATACTTTACAGGGTAACTACCAGTTGTCAGAAAGCATCCGAACTAAAAGGATCAATAGATTCCAAGGTGACTATCACCTGTCAAAACATTTCGATCCCAGAAAAACACACTCTGTGTTTGAAAGGAATGACTATACGCCCAACTCGGATTGTAATGTACCAAATAACTGTATAGATTACAATGGCCTTGCTGCTCCAAACGCACGTTGCCAAGGGCTGCCACTTCCCAACAGACCTGCCCGTCATCTTTACACTCACCCTGAGCAAGCCCCTCCTGCTGTGCACGTAGCCAAACACCCAAGCCCTGGCAAGTCAAAGAGCCTGGGAGATCTGACATCCGAGGACATATCTTGCAACTTTGAGAGCAAGTACAAGTACATCAGCAGGAGCTTCATCACCCCCAAcatgagggagagaaagaggatgTCAAGCCTAACGAACAGGCCTCAGTCTGCGGACCCTTTAACGGAGCAGCTGCGGAGACTGGTGTCTTTCGAGCCTGATGAGTGCAGCCAGCCTGGGCCAGTGAGCCCCCTGAGACAGGACGACGACTCCCCGAAGATCCTGTCTCGAAAGCTGTCATCTAGAAGCCAGAGCAGGGTACGTCACATCGCCAACCGAGCAAAAGAGAGGCAAGAGGCCAGCAAGCAAAAAGTCCCCGACAGCTGCAGCACAGCTGGAGTAGTCCTGCGAAACAAGCCCTCAGCACAGAATCCCACAGTAAACAGACACTCCACTGGTTCCTACATCGCTGGATACCTAAACCATATTAACGGGGCAGGCATGGAGGACAGGGGATTGCCTGAAGGAGCTTGCACATCATTACATTACAACTATAATGATCACTTTTACACTGATGATTCAGTCCTGCAAACAGATTCCGGGCCCCGGTCTGAGCCGGAGATTTACTTCTTGCTTAGGCTGTAAATGAAGTatacaaaaaaagacattaaaaaaaagctttgttttgttttacatactcCGTTTTTGACACCTTTTATATCTATACATCTCTATATAAATGATGTCCCCTTGTGTAAAGATGTGTTCTATTTTAATAGAAATCTTAGTCTTCCTTAACATTAGGTGTTGTATGTTAGACCGTGCTGTACATATTAGAAAGCAAGTCTGTaatttatagttaaaaaaaaaaggtaaaactaAATTGTGATGTTCAGAAAACTGcatgtgaaaaaacattttgagtaCTACAGCCTATACATGTAACGCATGACTATGCacaattttgtaaatgtttcagtcctgtacattttgcacagtactCATAGCATTGGATGcaatataaattaacatttttcctttctgttggTCATGAATTCAAGATTTTTAAGCACTTctgcatattttaaagcaaaaacgTGTGGagttaaatacttttatttttataattgcttTGATACCAACAGCAAATAATTTCATGATGGataaacttttattattatttcagaggGTTATAGACAGACAAACTGATGGACACAATTTAGGTGGGGGGATAGAGAATAATGTGGTTTTAACAGCAAATTATAAAAGCTGCAATTCCTGTGTTTGATGCATTCTGGAGacaatatactttgtatgagcCACAAAAAGAGGCAGAACCTGCACATTTTCTTACCAATGCAATAAAATTCTCAAACATCTGAA

Function

GO: NA

KEGG:

id description
K19006 PLCH; phosphatidylinositol phospholipase C, eta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70574 lncRNA upstream 30441 34363499 ~ 34368674 (+) False AMCG00009345
TU70575 lncRNA upstream 32396 34363499 ~ 34366719 (+) False AMCG00009345
TU70484 lncRNA upstream 320276 34045490 ~ 34078839 (+) True G56379
TU70463 lncRNA upstream 356856 34038134 ~ 34042259 (+) True G56376
TU70350 lncRNA upstream 941943 33456891 ~ 33457172 (+) True G56282
TU70601 lncRNA downstream 152531 34582947 ~ 34662345 (+) True G56474
TU70625 lncRNA downstream 532338 34962754 ~ 34963224 (+) True G56495
TU70631 lncRNA downstream 589818 35020234 ~ 35067229 (+) True G56501
TU70674 lncRNA downstream 1108471 35538887 ~ 35539780 (+) False G56541
TU70675 lncRNA downstream 1108471 35538887 ~ 35539780 (+) False G56541
AMCG00009345 mRNA upstream 29858 34363419 ~ 34369257 (+) True AMCG00009345
AMCG00009346 mRNA upstream 36679 34355739 ~ 34362436 (+) True AMCG00009346
AMCG00009343 mRNA upstream 145026 34220572 ~ 34254089 (+) True AMCG00009343
AMCG00009335 mRNA upstream 265420 34125029 ~ 34133695 (+) True AMCG00009335
AMCG00009336 mRNA upstream 277504 34119086 ~ 34121611 (+) True AMCG00009336
AMCG00009355 mRNA downstream 72232 34502648 ~ 34503259 (+) True AMCG00009355
AMCG00009357 mRNA downstream 207112 34637528 ~ 34677384 (+) True AMCG00009357
AMCG00009360 mRNA downstream 259342 34689758 ~ 34690484 (+) True AMCG00009360
AMCG00009361 mRNA downstream 289595 34720011 ~ 34720679 (+) True AMCG00009361
AMCG00009359 mRNA downstream 310817 34741233 ~ 34741959 (+) True AMCG00009359
TU70453 other upstream 367670 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 380300 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 2233750 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 4403677 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 4487551 29907911 ~ 29911564 (+) True G55573
TU70668 other downstream 958498 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 2929685 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 3179927 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 4011839 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 5004484 39434900 ~ 39436995 (+) True AMCG00009480

Expression Profile