RNA id: AMCG00009352


Basic Information

Item Value
RNA id AMCG00009352
length 1068
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00009352
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34513261 ~ 34530442 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGtcattctgtgtttttctttattactgGGATCAGACTATTTAGCTTATTCTTCTGATTTGCCAATTTGTAAACTGCAAGGAAACTTTGAGTTGAATGGGTTGTATAAAAAAGGTGACATTGTTTTGGGGGGATTATTTCCATTGCATTTTGCAACAGTATATCCTGAACTGACCTTCACTTCAAAACCAGAGCAGTTGAGATGTGAGAGCTTTCAATTGCGATCTTTCCAGTATGCACAGGCAATGGCTTTTACTATAGAGGAAATAAACAGAGACCCTGCCCTTCTTCCTAACATCACTCTGGGCTACAGGCTGTATGACAACTGTGTCAACCTGGCAGGAGCGTTTCGAGCAGCCATAGCCCTGATCAGCGGAGTGGGCGACATTTTCACTGACTACAGCTGTACAGGGACACCCCCAGTCTTAGGCATTGTTGGGGATCCTGATTCAACTAATTCCATTTCAATATCTAGAGTGCTGGGTCTTTTCAATGTTCCATTGGTActTGACATGTCAGGGTTGAGGGGTGCCTACACtgtttataaagcagtgtaCACCTTGGCACATTCCCTACATAATCTGATGTCCTGTGAATTTGGAAAAGGGCCATTTGAAAATAACTCCTGTGCTGACATCACAAGTGTGCAGCCCTGGCAGGTGAGGACATATTCTTTGGATAAGATAAAAGCAGCCACAGCCCTGATCAGCGGAGTGGGCGACATTTTCACTGACTACAGCTGTACAGGGACACCCCCAGTCTTAGGCATTGTTGGGGATCCTGGGTCAACTAATTCCATTTCCATATCCAGAATGCTGGATCTTCTCCACGTTCCTTTGTGGGCACAGACAATGGTATTTGCTATAGATGAAATAAACAGAGAGCCTGCCCTTCTTCCTAACATCACTCTGGGCTACAGGTTGTATGACAACTGTATCAACCTGGCAGGAGCGTTTCGAGCAGCCACAGCCCTGATCAGCGGAGTGGGCGACACTTTCACTGACTACAGCTGTACAGGGACACCCCCAGTCTTAGGCATTGTTGGGGATCCTGGGTTACAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70572 lncRNA downstream 154223 34357273 ~ 34359038 (-) False AMCG00009347
TU70553 lncRNA downstream 197253 34239484 ~ 34316008 (-) False G56438
TU70554 lncRNA downstream 208350 34239484 ~ 34304911 (-) False G56438
TU70508 lncRNA downstream 388282 34123606 ~ 34124979 (-) True G56401
TU70494 lncRNA downstream 463101 34049187 ~ 34050160 (-) False AMCG00009333
TU70644 lncRNA upstream 630149 35160591 ~ 35160877 (-) True G56513
TU70646 lncRNA upstream 642434 35172876 ~ 35173249 (-) True G56515
TU70654 lncRNA upstream 818002 35348444 ~ 35348927 (-) True G56522
TU70664 lncRNA upstream 827898 35358340 ~ 35358650 (-) True G56532
TU70667 lncRNA upstream 845644 35376086 ~ 35376369 (-) True G56535
AMCG00009354 mRNA downstream 5315 34507303 ~ 34507946 (-) True AMCG00009354
AMCG00009353 mRNA downstream 19445 34493131 ~ 34493816 (-) True AMCG00009353
AMCG00009350 mRNA downstream 64623 34442613 ~ 34448638 (-) True AMCG00009350
AMCG00009347 mRNA downstream 150920 34334261 ~ 34362341 (-) True AMCG00009347
AMCG00009348 mRNA downstream 180252 34310829 ~ 34333009 (-) True AMCG00009348
AMCG00009351 mRNA upstream 36577 34567019 ~ 34582515 (-) True AMCG00009351
AMCG00009356 mRNA upstream 57051 34587493 ~ 34607443 (-) True AMCG00009356
AMCG00009358 mRNA upstream 94584 34625026 ~ 34633822 (-) True AMCG00009358
AMCG00009362 mRNA upstream 169422 34699864 ~ 34700521 (-) True AMCG00009362
AMCG00009366 mRNA upstream 214676 34745118 ~ 34745790 (-) True AMCG00009366
TU70552 other downstream 234081 34239484 ~ 34279180 (-) True G56438
TU70548 other downstream 283872 34227274 ~ 34229389 (-) False AMCG00009342
TU69876 other downstream 3328295 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 3527266 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 3566050 30944367 ~ 30947211 (-) True G55881
TU70685 other upstream 1008445 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 1008445 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 1008445 35538887 ~ 35539810 (-) False G56546
TU70712 other upstream 1341681 35872123 ~ 35872597 (-) True G56568
TU70990 other upstream 2685518 37215960 ~ 37220076 (-) True G56800

Expression Profile