RNA id: AMCG00009355


Basic Information

Item Value
RNA id AMCG00009355
length 440
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00009355
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34502648 ~ 34503259 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCCATTTGTAAGCTTCAagaacattttcagttgaatggAATGTATAAAAATGGTGATATTGTTTTTGGGGGAGTTTTTGAAACGCATATTACAGCAATTAATCCGGAATTATCCTTCACTGCTAAACCCGTCAAGCTAAGATGTGGGAGCTTTTATTTTGCAGCTTTCCAGTGGGCACAGACTATGGTTTTTGCTATTGAGGAAATAAACAGAGACCCTGTGCTTCTTCCTAACATCACTCTGGGCTACAGGCTGTATGACAACTGTGTCAACCTGGCCGTGGCATTTCGAGCAGCCACAGCCCTGATCAGTGGAGTGGGCAACACTTTCATTGACTACAACTGTACAGGGACACCCCCAGTCTTAGGCATTGTTGGGGATCCTGGGTCGACACATTCTATTGCCATATCGAGGATGCTGGGTCTCTTCCAGATGCCT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70574 lncRNA upstream 133974 34363499 ~ 34368674 (+) False AMCG00009345
TU70575 lncRNA upstream 135929 34363499 ~ 34366719 (+) False AMCG00009345
TU70484 lncRNA upstream 423809 34045490 ~ 34078839 (+) True G56379
TU70463 lncRNA upstream 460389 34038134 ~ 34042259 (+) True G56376
TU70350 lncRNA upstream 1045476 33456891 ~ 33457172 (+) True G56282
TU70601 lncRNA downstream 79688 34582947 ~ 34662345 (+) True G56474
TU70625 lncRNA downstream 459495 34962754 ~ 34963224 (+) True G56495
TU70631 lncRNA downstream 516975 35020234 ~ 35067229 (+) True G56501
TU70674 lncRNA downstream 1035628 35538887 ~ 35539780 (+) False G56541
TU70675 lncRNA downstream 1035628 35538887 ~ 35539780 (+) False G56541
AMCG00009349 mRNA upstream 72232 34399115 ~ 34430416 (+) True AMCG00009349
AMCG00009345 mRNA upstream 133391 34363419 ~ 34369257 (+) True AMCG00009345
AMCG00009346 mRNA upstream 140212 34355739 ~ 34362436 (+) True AMCG00009346
AMCG00009343 mRNA upstream 248559 34220572 ~ 34254089 (+) True AMCG00009343
AMCG00009335 mRNA upstream 368953 34125029 ~ 34133695 (+) True AMCG00009335
AMCG00009357 mRNA downstream 134269 34637528 ~ 34677384 (+) True AMCG00009357
AMCG00009360 mRNA downstream 186499 34689758 ~ 34690484 (+) True AMCG00009360
AMCG00009361 mRNA downstream 216752 34720011 ~ 34720679 (+) True AMCG00009361
AMCG00009359 mRNA downstream 237974 34741233 ~ 34741959 (+) True AMCG00009359
AMCG00009367 mRNA downstream 281419 34784678 ~ 34784977 (+) True AMCG00009367
TU70453 other upstream 471203 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 483833 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 2337283 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 4507210 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 4591084 29907911 ~ 29911564 (+) True G55573
TU70668 other downstream 885655 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 2856842 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 3107084 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 3938996 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 4931641 39434900 ~ 39436995 (+) True AMCG00009480