RNA id: AMCG00009358


Basic Information

Item Value
RNA id AMCG00009358
length 636
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00009358
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34625026 ~ 34633822 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTTTGAGTTGAATGGGTTGTACAAAAAAGGTGACATTGTTTTGGGTGGACTATttgaagcacatttaaaaacagtacatCCTGAACTGACCTTCACTTCAAAACCAGAGCAGCTGAGATGTGAGAGCTTCTATTTTCCAGCCTTCCAGGCGGCACAGACAATGGCTTTTGCAATAGAGGAAATAAACAGAGACCCTGCCCTTCTTCCTAACATCACTCTGGGCTACAGGCTCTATGACAACTGTGTCAACCTGGCAGGAGCGTTTCGAGCAGCCACAGCCCTGATCAGCGGAGTGGGCGACACTTTCACTGACTACAGCTGTACAGGGACACCCCCAGTCTTAGGCATTGTTGGGGATCCTGGGTCAACTAATTCCATTTCCATATCCAGAATGCTGGGCCTTTTCCATGTTCCTTTGGTActCTCCTCCCTCTCTGGCTCCGAGGACGGGGACGACAGCTCCAGCTCCTCTCCCTCTGGCTCTGGGGACAGGGACagcagctccagctcctccccCTCTGGCTCCGGGGATGGCACCCCCCATATCCTCCATATGCTCGATGGACCCCGGGTGGTGGCATTGTTCCCAGGTATCCCACCTCCCCCCATCTCTGCACGACAGCTCATTGATGGC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70572 lncRNA downstream 265988 34357273 ~ 34359038 (-) False AMCG00009347
TU70553 lncRNA downstream 309018 34239484 ~ 34316008 (-) False G56438
TU70554 lncRNA downstream 320115 34239484 ~ 34304911 (-) False G56438
TU70508 lncRNA downstream 500047 34123606 ~ 34124979 (-) True G56401
TU70494 lncRNA downstream 574866 34049187 ~ 34050160 (-) False AMCG00009333
TU70644 lncRNA upstream 526769 35160591 ~ 35160877 (-) True G56513
TU70646 lncRNA upstream 539054 35172876 ~ 35173249 (-) True G56515
TU70654 lncRNA upstream 714622 35348444 ~ 35348927 (-) True G56522
TU70664 lncRNA upstream 724518 35358340 ~ 35358650 (-) True G56532
TU70667 lncRNA upstream 742264 35376086 ~ 35376369 (-) True G56535
AMCG00009356 mRNA downstream 17583 34587493 ~ 34607443 (-) True AMCG00009356
AMCG00009351 mRNA downstream 42511 34567019 ~ 34582515 (-) True AMCG00009351
AMCG00009352 mRNA downstream 94584 34513261 ~ 34530442 (-) True AMCG00009352
AMCG00009354 mRNA downstream 117080 34507303 ~ 34507946 (-) True AMCG00009354
AMCG00009353 mRNA downstream 131210 34493131 ~ 34493816 (-) True AMCG00009353
AMCG00009362 mRNA upstream 66042 34699864 ~ 34700521 (-) True AMCG00009362
AMCG00009366 mRNA upstream 111296 34745118 ~ 34745790 (-) True AMCG00009366
AMCG00009364 mRNA upstream 132012 34765834 ~ 34768066 (-) True AMCG00009364
AMCG00009365 mRNA upstream 198712 34832534 ~ 34833167 (-) True AMCG00009365
AMCG00009363 mRNA upstream 210697 34844519 ~ 34856467 (-) True AMCG00009363
TU70552 other downstream 345846 34239484 ~ 34279180 (-) True G56438
TU70548 other downstream 395637 34227274 ~ 34229389 (-) False AMCG00009342
TU69876 other downstream 3440060 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 3639031 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 3677815 30944367 ~ 30947211 (-) True G55881
TU70685 other upstream 905065 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 905065 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 905065 35538887 ~ 35539810 (-) False G56546
TU70712 other upstream 1238301 35872123 ~ 35872597 (-) True G56568
TU70990 other upstream 2582138 37215960 ~ 37220076 (-) True G56800

Expression Profile