RNA id: AMCG00009373


Basic Information

Item Value
RNA id AMCG00009373
length 1662
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00009373
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 35423478 ~ 35805085 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGCTGGCTCCACGCTGTACTGTTCCAGCATGTATGGTCACGGGCCGAGAACCCAGCAGCTGGATGGTCCCTATTGGCCCTCTAGGGGTCTGCACggcctctttttctttcttgagGTATTACATTACCTGAAAGAAGTTAACTTCACAACCTGGAATGGAGAAAAGGTGTATTTCGATGAAAATGGGGATCCAGCAGCACGATATGCGTTAGTGAACTGGCAGCTTAAAAATAATGGAATTACAACAATTGAAGATATTGGTCTATATGATGCCTCCTTACCAGATGGACAgagatttgtaatgaatgaagtcagtgcagtgtgggctGGTGATCGGGATGAGGTATTACATTACTTGAAGGATGTTAACTTCACAACCTGGAATGGAGAAAAGGTGTATTTCGATGAAAATGGAGATCCAGCAGCACGATATGCATTAGTGAACTGGCAGCTTAAAAATAATGGAATTACAACAATTGAAGATATTGGTCTATATGATGCCTCCTTACCAGATGGACAgagatttgtaatgaatgaagTCAGTGCAGTTTGGGCTGGTGATCAGGACAAGCAATATAAATCCCTCCCCAGACTCCGTCTCTTTCCCTGCCTGAGCCATACCGCCCACAGTATTAGCAGACACCACCAGGTCCTCGACTGGAGTGGCCACCTGGCGGTGTATGCGTCGGCCCCTCTGTTAACTGAGGCTCCTGTGGCTTTGCGGTATCGCTGCTCCCAACCCCTCCGCTCTGTCCACTGGAGCCTGCCTCCCCCTCGTCTCCCTGTGCTGCATTACTTGTCCAGAGTTAACTTCACATGCAGGAATGGAGAAAGGGTctattttgatgaaaatggaGATCCAGCAGCACGCTATGCCCTAGTGAACTGGCAGCTTAACAAGGAGGGAATCACAGCATTTGAAATCATTGGTCTGTATGATGCTTCTTTACCAGACGAACAGCCATTTGTAATGAATGATGTCAGTCCTGTATGGGCAGGTGATCAGCAAAAGGCAGCTATAATTAAAGTGAAGGCACACCAGGACACTGGCAATCAGGCTGCAATAGCCGCTGCCCCACTGCTACTACCGTCCTCTGTCTCCGCTGCAGTCCCCATAAACCCTTCTCTCGCAGATGTCTGTCAGTCACAGACAGATTGCGAACAGGAGGAATCGGGGAACGGGTCAAAGGCCGAGCTATCTACGAAAGACAGCTCTGGGTTGACCCGTCACAAACCTGTGTTACAACACATGCGTATACACTGGTGGTGGACTGGTATGGGCCGCGAGGTTGAGAAGTTCACTTCCTTCAGaGCAACACCTGAGTCTTCTCCTCCCATTCTACCAGTGATGCTTGATTCAACTTGCGTCTACTACCTGCGCAGATATCAACAGCGCAACCGGGTTTGGCGGCACAACCCTGCACATGAACAGATGCCAGTAGAAAGCCATCAGTATGAAGACCCAGACTTTGGGAACGAGTTGTGCAACTTGACCAACATCTCAAATCTTCCTAAATTGAAGGCAACCCTTAAGGCCACTGCACCAGAGGATGAGATTACCAAGCGATTGAATATCGGAATACTAATTGTGACCGAAGATGGTGGACAAAACCTGCTCCCTAAAGAAATCCTTGATGTTGCAGTCATCCTGGATTAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70667 lncRNA downstream 47109 35376086 ~ 35376369 (-) True G56535
TU70664 lncRNA downstream 64828 35358340 ~ 35358650 (-) True G56532
TU70654 lncRNA downstream 74551 35348444 ~ 35348927 (-) True G56522
TU70646 lncRNA downstream 250229 35172876 ~ 35173249 (-) True G56515
TU70644 lncRNA downstream 262601 35160591 ~ 35160877 (-) True G56513
TU70714 lncRNA upstream 84365 35889450 ~ 35889682 (-) True G56570
TU70757 lncRNA upstream 275550 36080635 ~ 36105419 (-) True G56611
TU70758 lncRNA upstream 291723 36096808 ~ 36393518 (-) True G56612
TU70874 lncRNA upstream 1064463 36869548 ~ 36871823 (-) True G56710
TU70924 lncRNA upstream 1362909 37167994 ~ 37168244 (-) True G56742
AMCG00009363 mRNA downstream 567011 34844519 ~ 34856467 (-) True AMCG00009363
AMCG00009365 mRNA downstream 590311 34832534 ~ 34833167 (-) True AMCG00009365
AMCG00009364 mRNA downstream 655412 34765834 ~ 34768066 (-) True AMCG00009364
AMCG00009366 mRNA downstream 677688 34745118 ~ 34745790 (-) True AMCG00009366
AMCG00009362 mRNA downstream 722957 34699864 ~ 34700521 (-) True AMCG00009362
AMCG00009374 mRNA upstream 102127 35907212 ~ 35908512 (-) True AMCG00009374
AMCG00009383 mRNA upstream 731081 36536166 ~ 36550686 (-) True AMCG00009383
AMCG00009385 mRNA upstream 771122 36576207 ~ 36576473 (-) True AMCG00009385
AMCG00009384 mRNA upstream 815321 36620406 ~ 36623497 (-) True AMCG00009384
AMCG00009382 mRNA upstream 835149 36640234 ~ 36663731 (-) True AMCG00009382
TU70552 other downstream 1144298 34239484 ~ 34279180 (-) True G56438
TU70548 other downstream 1194089 34227274 ~ 34229389 (-) False AMCG00009342
TU69876 other downstream 4238512 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 4437483 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 4476267 30944367 ~ 30947211 (-) True G55881
TU70712 other upstream 67038 35872123 ~ 35872597 (-) True G56568
TU70990 other upstream 1410875 37215960 ~ 37220076 (-) True G56800
TU71449 other upstream 2775200 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 3030231 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 4343640 40148725 ~ 40157471 (-) False AMCG00009521

Expression Profile