RNA id: AMCG00009374


Basic Information

Item Value
RNA id AMCG00009374
length 636
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00009374
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 35907212 ~ 35908512 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tccTTTGGTTTGCCAAAAATATCAATTTCAAGACATCAACTTCGAATTTACATATCCCGAGGATGCACTGGAAAGAAGATTGCTGAGCACATAGGGTGTTCAGTGTCATACATCTACAAGCGACTGAAACAAGAGGGTCTGTCACCGCGCAGTAAATTCAGCAACATCTCTGACAGTGAACTTGATAATGAAGTTAAATTACTTCATTTTCAGTATTCCAATGCAGGGACGGAGGTGCGGATTCATGGTGCTATTGATGGATTTTCATGCCTCATTCCATACTTAAATTGTGCATCGGACAACAGTTCAACTACAGTTCTGAAGgttttttccaaagctgttgTGGAGTATGGCTTACCATCTCGGGTGAGGTCAGACCATGGTGGGGAAAATATACAGGTGGCATTGCTCATGAATGTGTTGAGAGGACTACAAGGAGGTACTGGAAGGTCAGTCCATAACCAAAGAATTGAAAGGCTTTGGAGAGATGTGTTCTCACAAGTTGTTGACCCCTTGTACAAGGAATTATATGAAATGGAAGACCTTGGTGTATTGGACCCAGATGacaatattaacaaaacatgtCTTCATTTGGTGTACcttgaagaaataaacaatcGACTTGATTTGTTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70714 lncRNA downstream 17530 35889450 ~ 35889682 (-) True G56570
TU70707 lncRNA downstream 92998 35782424 ~ 35814214 (-) True G56564
TU70692 lncRNA downstream 316120 35590768 ~ 35591092 (-) True G56549
TU70672 lncRNA downstream 389686 35517092 ~ 35517526 (-) True G56540
TU70667 lncRNA downstream 530843 35376086 ~ 35376369 (-) True G56535
TU70757 lncRNA upstream 172123 36080635 ~ 36105419 (-) True G56611
TU70758 lncRNA upstream 188296 36096808 ~ 36393518 (-) True G56612
TU70874 lncRNA upstream 961036 36869548 ~ 36871823 (-) True G56710
TU70924 lncRNA upstream 1259482 37167994 ~ 37168244 (-) True G56742
TU70983 lncRNA upstream 1292520 37201032 ~ 37267831 (-) False G56795
AMCG00009373 mRNA downstream 102127 35423478 ~ 35805085 (-) True AMCG00009373
AMCG00009363 mRNA downstream 1050745 34844519 ~ 34856467 (-) True AMCG00009363
AMCG00009365 mRNA downstream 1074045 34832534 ~ 34833167 (-) True AMCG00009365
AMCG00009364 mRNA downstream 1139146 34765834 ~ 34768066 (-) True AMCG00009364
AMCG00009366 mRNA downstream 1161422 34745118 ~ 34745790 (-) True AMCG00009366
AMCG00009383 mRNA upstream 627654 36536166 ~ 36550686 (-) True AMCG00009383
AMCG00009385 mRNA upstream 667695 36576207 ~ 36576473 (-) True AMCG00009385
AMCG00009384 mRNA upstream 711894 36620406 ~ 36623497 (-) True AMCG00009384
AMCG00009382 mRNA upstream 731722 36640234 ~ 36663731 (-) True AMCG00009382
AMCG00009388 mRNA upstream 824667 36733179 ~ 36767720 (-) True AMCG00009388
TU70712 other downstream 34615 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 367402 35538887 ~ 35539810 (-) False G56546
TU70686 other downstream 367402 35538887 ~ 35539810 (-) True G56546
TU70688 other downstream 367402 35538887 ~ 35539810 (-) False G56546
TU70552 other downstream 1628032 34239484 ~ 34279180 (-) True G56438
TU70990 other upstream 1307448 37215960 ~ 37220076 (-) True G56800
TU71449 other upstream 2671773 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 2926804 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 4240213 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 6760615 42669127 ~ 42673707 (-) True G58025

Expression Profile