RNA id: AMCG00009379


Basic Information

Item Value
RNA id AMCG00009379
length 2092
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00009379
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 36528946 ~ 36545717 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCTGCATAATGGAATCGCATGTCCTAATATTTCTCATGTCCTATTTGCCTATTTGGGTGTGCACTGGTTTTACTTGCACCCAGTTGAAGGATTTTGGAATGACTGGTTTATTCAAGAATGGAGATGTAATGATCGGTGGCatttttcctgtatttaataaacaagAGGATATGCATGTCTCATTTCAAGCTGAACCATCCAAAGCAAAATGTGTTGGGTTGCTACCCAATGTCACATTGGGCTATAAAATCCTCGACTCCTGTGCCTCTCCGTCTGAGGCGTTAAGAGCTGCATTGACATTGGTAAACGAAGAACATATTCAATCGGATGGTACATGCAATATCAAAACACCTGCAGTTATAGCCGAGTCAGGATCATCCCAGTCAATAGCTATTGCAAGAACAATTGGACCCTTCAGAATGCCTTTGTTACTCGGGGACTTTAGGATATCTGAATTATTCAACGACGGAGATATTGTCATTGGTGGTATTTTTCCAATTTATCTTACGCAAGAAAGTGTCTACACAGACTATAAACAAGAACCAGAGAAAACGCACTGTTCTGGGTTTGATTTGAGGGCATTTCGCTGGGCACAGGCGATGATGTTTGCAATAAAGGAAATCAACATGAACCATAACTTGCTATCTAATGTCACTCTGGGATATCGAATACTGGATTCCTGCGCTTCCCCCACTCAAAATATAAGGGCAGCCCTCTCCTTACTTAATGGTCAGGACAAAATGAAAGTCAACTCTACCTGTCAAACCTCAATTCCTGCCATTGTAGCAGAGGCCGGGTCATCGCAATCTGTGGCCATTTCTCAATTCATCGACACCTTCAGAATTCCAATGCTGGCCATGGTAGTGTGCTTTGGCCTGTGCACCCTGTATGCGGTGCAGGTCGCTTTTGCCGGCCCCGCCTGTCTGCTGCGGGGAGACTTTACTCCGCCGGCTTTGGCCCAAGATGGAGATGTTATAATCGGTGGGGTTTTCACTCTGCATTACAAAGGAGCGGTGCGGGAAATGTCTTACAGAACCGGACCCAAGAACCCTGGATGCGTCAAttTCTTTCTGAGGGCTTTGCGTTGGGCACAGGGGATGATTTTCGCGATAGAGGAGATCAATCGGGACAAGAGCCTGCTCCCTAACGTGAAGTTGGGCTTCAGGATTCACGACTCCTGCGCTAACCCACCGGAGGCTCTCCGGGCGTCGCTAACTCTGGTCAATGGCCGAGATGAATCTCTCCCAGACCTCGCCTGCACAGAGAAATCTCCCCTTGTCGCAgaaaaaatactGACGCATGTTGAGCTTATTAAAGAAACCCAAGTAAAAGTGATTCTGGTATTTGCAACAGAAATCGACATATACATACTAGTTAATGAACTGGTGGAACACAATGTCACTGGGATCGTGTGGCTGGCCAGTGAAAGCTGGTCTACGGCAGGCCTGCTCTCAACCAAAGAAAAGTTTGGTGTCCTTGGGGGTTTGCTGGGATTGGGGATCCAAAGAGCAAATATTGAAGGCTTTAAAGAATTTCTGCTAAGGATTCATCCCTCAGATTATCCTGGAAATATTTACATCAAGGAGTTCTGGGAAACCACTTTTGAATGCACGTACAATACTGCTGCTAACAAGACTGACAATTCAGACTCTCTTAAAGCTGAGAAGAGATGCACTGGTTTGGAGGATCTGAGatcaattgaaaatatttacactgaCATATCCCAACTACGTGTAACATACAATACTTACAAAGGTGTTTATGCAATTGCCCATGCACTTCACAACATAAGGcactgtgaaaatgaaatgcagaatgAGACATGTTTTGCCATTGAAAATATAACACCTTGGGAGGTCACACAGAATTTAAAGCGGGTCAAATTTCGAACACAAATGGGAGATGAAGTCCAGTTTGATGAAAATGGCAATCCTTTTCCTGCTTTTGATATTATTAATTGGCAGCTAGACCAAAACGGCAAGGTGCAATATGTGGATATAGGCTACTATGATGGCTCTGCTCCTACAGGACAGAAGCTTGTTATACAGGAAGACGCTATAATCTGGAATGGCGGACAAAAGACAGATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70770 lncRNA upstream 49571 36476438 ~ 36479375 (+) True G56623
TU70730 lncRNA upstream 494251 35948851 ~ 36034695 (+) False G56584
TU70728 lncRNA upstream 576964 35927372 ~ 35951982 (+) True G56584
TU70726 lncRNA upstream 602751 35925938 ~ 35926195 (+) True G56582
TU70711 lncRNA upstream 657906 35870828 ~ 35871040 (+) True G56567
TU70776 lncRNA downstream 81478 36627195 ~ 36631814 (+) True G56629
TU70777 lncRNA downstream 81478 36627195 ~ 36631814 (+) False G56629
TU70862 lncRNA downstream 329361 36875078 ~ 36875398 (+) True G56698
TU70857 lncRNA downstream 354576 36900293 ~ 36975061 (+) True G56694
TU70891 lncRNA downstream 483489 37029206 ~ 37029542 (+) True G56712
AMCG00009380 mRNA upstream 13220 36515194 ~ 36515726 (+) True AMCG00009380
AMCG00009378 mRNA upstream 111943 36410058 ~ 36417003 (+) True AMCG00009378
AMCG00009376 mRNA upstream 322448 36205885 ~ 36206498 (+) True AMCG00009376
AMCG00009377 mRNA upstream 323062 36204810 ~ 36205884 (+) True AMCG00009377
AMCG00009375 mRNA upstream 682265 35845970 ~ 35846681 (+) True AMCG00009375
AMCG00009381 mRNA downstream 30500 36576217 ~ 36611929 (+) True AMCG00009381
AMCG00009386 mRNA downstream 145116 36690833 ~ 36698116 (+) True AMCG00009386
AMCG00009387 mRNA downstream 158572 36704289 ~ 36731243 (+) True AMCG00009387
AMCG00009392 mRNA downstream 363379 36909096 ~ 37086094 (+) True AMCG00009392
AMCG00009393 mRNA downstream 540800 37086517 ~ 37087593 (+) True AMCG00009393
TU70668 other upstream 1139619 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 2497501 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 2510131 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 4363581 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 6533508 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 814384 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 1064626 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1896538 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2889183 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 3402289 39948006 ~ 39949200 (+) True G57430

Expression Profile