RNA id: AMCG00009381


Basic Information

Item Value
RNA id AMCG00009381
length 1863
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00009381
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 36576217 ~ 36611929 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTATAGAGAAAACTCCCAGCGTTCTGGCAACAACCATAGATCCAGAAGAACTGGCATCCCCAATAATGATTGGGACCTCTGGAGCTTGCCCACACCCCAAGCCAGACACGGTGTCCCTCTCTCCTGTCACAAGCGCCATGGCCGCCCCCAGGGTACTCAGCTGTGTCAGGCAGGTGTCGGCGATGTCCAAGGAGGCAGTGGACCCAGGTGTGGGAGGCTGTGCTCATATCTCAACTGTCTCCCTCAATGCTGCTCTTCCAGCTGGGCTGCCAACAAGCACCTTCACCTGCCAGCACTGTGAGTGGGGGGTGGCCAAAGTGTGtggcagctgcagcagcaggcgCAGGGGTCTCAGGGAGAGGCCGAGaaaccAGTCTAGTTCTAGAATGAACCTTTATGCCTGGctctatttttctttcatatttcatCGGAATGTATTTAGAGCGCAGCAATCCACATGCAAGCTACATGGAAAGTCAGGCTTAAAAAGACTTTACAGAAATGGAGACTTAACTATTGGAGGATTATTCCCTGTCCATACTAGAGTAGTTCTACCtgacaaatcatttaaatataaaccacAATTGTCAAAATGTGAAGGGTTTGATATCAGGGGGTATCGCTGGGTGCAGGCAATGATTTTTGCCGTGGaagaaatcaataacaacaCAGAACTTCTCCCCAACATCACACTGGGTTACACCATCGCTGACACCTGCCTGACACAGCTGAGTACCCTGGGGGCGGCCATGGCGCTTGTGACAGGAGAGAGGGACACCGTGTCTGGCTTGGGGTGTGGGCGAGCTCCAGAGGTCCCTGTCATTATTGGGGATGCCAGTTCTTCTGGATCTATGGTTGTTGCCAGAACGCTGGGAGTCTACTCTATACCCATGGCAGAAATTAAAGGTCTGAGGTCATTCCTGTGCAGAATTCACCCTGAATCAGACCCAGCTGATCCGTTCATCACTGAATTTTGGGAAGCAGTGTTTGGTTGCTCTCTAGATCAGAGTGTGAGTTCTTCCCCAACATCACTATCATCCAAGCCAAAGTGTACAGGAGCAGAAAACTTGGAAAGCGTGGAAAGCACATATAATGATGTCTCACAATTAAGAACTACCTACAATGTGTACAAAGCTGTTTACACAATAGCACATGCTGTTCATGACATGCTTTCCTGTAGCCCTGGAGAAGGTCCTTTTGAGAATGGATCATGCCCAGACATCACTCACCTCCAGCCATGGCAGGAAGGTCATGTTGTTCTGGGAGGGATGTTTCCAATTCACTCCAAAGGCATCAATGAGTTGCAGGCTTACAGGGAGAAGCCAGGAAAGAAACAATGTAGGGGGGTGTTTCGATGGTCCCAAGCAATGATTTTCTTCATagaggaaataaacagaaacaaaactctTTTACCCAATGTCACACTTGGATACGCTTTGTATGACAACTGTGGAATTGAAGTCCAGTCAATGAAAACAGCATTATCAATGATAACTCTTCCACTGAAAAATGGGGAAAAGGTGTGCCATGAAAATCCATCTATACCAATAATAATAGGGGACTCTGGATCTTCTCTTTCAATGGCGATATCCAGACTACTGAATCTGTTCAAAGTTCCTTTGCTTAGAGTGACCTACAACGTGCACAAAGCTGTGTACGCTGTAGCCCATGCTTTACACAATTTACAAGCCTGTGAGAATGAGGATACATGTGAGCTCAGAGAAGACTTTGATATGATCTCACATCATAAGGAAGGCCATGTTGTTCTGGGAGGGATGTTTCCAATTCACTCCCAAGGCATCCATGAGAAGCAGCCGTATGGGGAGAAGCCAGGACAGAAGCAATgtGTGCACAAATGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70770 lncRNA upstream 96842 36476438 ~ 36479375 (+) True G56623
TU70730 lncRNA upstream 541522 35948851 ~ 36034695 (+) False G56584
TU70728 lncRNA upstream 624235 35927372 ~ 35951982 (+) True G56584
TU70726 lncRNA upstream 650022 35925938 ~ 35926195 (+) True G56582
TU70711 lncRNA upstream 705177 35870828 ~ 35871040 (+) True G56567
TU70776 lncRNA downstream 15266 36627195 ~ 36631814 (+) True G56629
TU70777 lncRNA downstream 15266 36627195 ~ 36631814 (+) False G56629
TU70862 lncRNA downstream 263149 36875078 ~ 36875398 (+) True G56698
TU70857 lncRNA downstream 288364 36900293 ~ 36975061 (+) True G56694
TU70891 lncRNA downstream 417277 37029206 ~ 37029542 (+) True G56712
AMCG00009379 mRNA upstream 30500 36528946 ~ 36545717 (+) True AMCG00009379
AMCG00009380 mRNA upstream 60491 36515194 ~ 36515726 (+) True AMCG00009380
AMCG00009378 mRNA upstream 159214 36410058 ~ 36417003 (+) True AMCG00009378
AMCG00009376 mRNA upstream 369719 36205885 ~ 36206498 (+) True AMCG00009376
AMCG00009377 mRNA upstream 370333 36204810 ~ 36205884 (+) True AMCG00009377
AMCG00009386 mRNA downstream 78904 36690833 ~ 36698116 (+) True AMCG00009386
AMCG00009387 mRNA downstream 92360 36704289 ~ 36731243 (+) True AMCG00009387
AMCG00009392 mRNA downstream 297167 36909096 ~ 37086094 (+) True AMCG00009392
AMCG00009393 mRNA downstream 474588 37086517 ~ 37087593 (+) True AMCG00009393
AMCG00009396 mRNA downstream 521300 37133229 ~ 37145082 (+) True AMCG00009396
TU70668 other upstream 1186890 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 2544772 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 2557402 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 4410852 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 6580779 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 748172 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 998414 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1830326 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2822971 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 3336077 39948006 ~ 39949200 (+) True G57430

Expression Profile