RNA id: AMCG00009382


Basic Information

Item Value
RNA id AMCG00009382
length 3387
RNA type mRNA
GC content 0.38
exon number 23
gene id AMCG00009382
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 36640234 ~ 36663731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGACAAGACTTTGTCCTCGGGTTcagccttttcttttctataaCACTTCCCAGCTACATCTACAAAGGGAATCTGGCAGTTCAATTCCAGTTTCAAGGTGCacgttttaagttttaaaagatCAAGGATTGGTGTATTGTTTCAGGcaaagacagaaagacagatggAACCAGTAGATAATAACGCGCCAAAATcaaaaaaaaagctacaatGGACATCCTTGGAGATTGGACTGACAACCATAGTGTCTCTTCTCATGATTGTGGTGATTGCTCTGATAAGCTTAATTGCAACACAAGGTGGTGATGATACTTGCAAAACTGCAGATTGTGCAAAATCAGCTGCACGCATAATTGAAAATATGGACATCAGTGCAAATCCTTGCCAGAACTTTTACCAATACGCCTGTGGAGGATGGTTAAAGAAGAACATTATTCCTGAAACCAGTTCTCGGTATAGCACATTTGACATTCTGAGAGATGAACTCGAAGTTGTGCTAAAAGAGGTTCTCGAAAAGCCTGACACAATGGAAATTTCTGCGCTGACCAAAGCAAAGTCACTGTATCAATCCTGCACAAATGAAAcggCCATTGAAAGCAGAGGCGGTGCTCCATTGATTAATGTGCTGCCTGACATTAAAGACTGGCCAGTAGCAGCTGACAACTGGGAGGACAGATTTGGGTTAACCTGGACAGCTGAAGACGCGATCGCAAAGCTGAATCAGAATTACGGAAAGCAAGTCCTCGTAAACTTTTTTGTCGGAACGGACGACAAAGACTCCAATGTCCACATTATTCACTTTGATCAGCCTGGACTAGGCCTCTCATCCCGTGATTACTATTCTTGTCAAGGTTTATATAAAGAGACCTGTGATGCATATCGGCAGTTCATGATAGATGTGGCCAAGCTGATCCGAGCAGAGAGAGGCCTGACAGTCAATGAGACTGACATCACGGCCCAGTTATTGAAAGTCATGGATCTGGAGAAAGCAATTGCTAATGCAACAGATAGACCAGAAGACAGAAACGATCCTGTTCTCCTCTATAACAAAATGGAGTTAGGTGTTATGAAAGACAATTTTTCCTTAGAGATTAAAGCAAAAaaATTTAACTGGACTCGTTTTACCAACAATATCATGGGATCTGTTAATATTACCATAACAGAACAGGAGCCTGTTGTTGTTTATGCCCCCAATTATCTTAGGAAACTGAATCCCATCCTCTTAGAGTACACACCAAGGGacattcaaaattatattgtgTGGCGCTTCATTATGGATATGGTCAGCAGCTTGAGTAGAAACTACAAGGATTCAAGGAAAGCTTTCCGTAAGGCCCTTTATGGGACAACATCTGAGACGGCAGTTTGGCGCCAGTGTGCAAACTACGTCAACAGCAACATGGAGAATGCAGTGGGAAGGTTATACATCGAAGAGGCCTTTGCAGGAGAAAGTAAAGAGATGGTTGATGAAATGATTGTCCAGATGCGGGAAGTGTTCATACAGACTCTAGATGACCTGTCATGGATGGATAAGGAAACGAGAGGAAAAGCAGAAGACAAAGCAAGAGCCATTAAAGAACGAATTGGGTACTCAGATAATATCAACGACAATGCCTATCTGGACAAGGAGTACAAAGATTTGAATTACGATGTGGAGAAATACTTTGAGAACTTCCTTCAGAACCTGAAGTTTGGGCAGATGAGGCGACTGAAGAAACTCAGAGAGAAAGTAAACAAAGAGGAGTGGATCACTGGAGCGGCCATTGTCAATGCCTTCTATTCTTCAAGCAGAAACCAAATagttttccctGCTGGAATCCTTCAGCCCCCTTTCTTTGGCAAAGGTCAATCCAAATCTCTGAATTATGGTGGGATAGGCATGGTCATTGGCCACGAAATCACTCATGGCTTCGATGACAATGGACGAAACTTTGACAAAAATGGAGATCTCACAGACTGGTGGACAAAAGAGTCAGCTGACAAATTTAATCAACTCTCCCAGTGTATGGTCTATCAGTATGGAAACTTCTCCTGGGATCTAGcaggtggtcaaaatATCAGTGGTGTTACTACTCTGGGAGAGAATATTGCAGACAATGGTGGAATCAGACAAGCATATCAAGCttacaaaaattacattaacacaCACGGAGAAGAGGAACGTCTCCCAGGAATTGACATGAACCACAAGCAGTTATTCTTTCTCAATTTTGCACAGGTGTGGTGTGGGACTTACAGGCCTGAGCATGCTGTCAATTCCATCAAAACAGATGTCCATAGTCCTGGACAATTCAGagtgttagggtcaTTACAGAATTTCCCAGAATTTGCTGAAGCATTTTCCTGCAGCATGGATGATTACATGGCCCCCAAGAAGCAGTGTCGGGTTTGGTAAAAAGAAACGGCACCGCAAAccaagagggagagaaagagccGTCACTATTGAAAGACTGTTAGACAATAATTGCAGGTATTCAACTGCACATATACAGGGTAGAATTATTGAATTCAGTGCATTCACACagattaatttttatttttttggtcgGAGTTTATGTGCTAAATGGTGAATTGTTCAAAAActagttgtttttcttttcttttttttatgttacggtaacactgaaaaataatttagcattttctatataaatatttttaaacatttttgcataaaagataaaaacaaagacactcatataagttaatattttttatcaGAATGACTTCTGTTATGAAAGTGatatctatttaaaacaataccagAAAAGACAGCAAATGTGGAAAAAGGCAAGGCACAAATACTTTACACCAAAGACTTCTAATTTTACTTTTCATATAACCCTATACATATTCTTCAATACCTGCTAAAAagctaaaataacattttcattttataaacagGATGTCTTGGGATTGATAACTGATATGATGTGACAAAGGATAACAAGAGTAAGATCCATACATATAATTTTCAAAGAAATGTTGGTTTTTAAacctatacaatattataagatgacatgtttatttactcacattttaattggaaatgatgtacttttttttcagatatctttatatggaaatatattattatgaaacaACATACATTGTGTCAGAAATTATAATTCTGTTTTCTTGATCAtaacaaaacaagcacaaaaaactataaaatatgttattgtattgtcAAATCCCTGCAATTTCTGGTATCCACGGTTAAAGATGATACCTGGTAAATAAACACTTCCATGATTTACAAAACCTAATACCTTTTCTTCAAGGTGAATTCTTATTTAGAAGGTTAAACATAAATACCTCAGATGCCTGGATTTAGATACTTTTTAATAAGCATCTTCAAAAAAGATTTGTTAATAAATTCTAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01389 MME, CD10; neprilysin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70758 lncRNA downstream 246716 36096808 ~ 36393518 (-) True G56612
TU70757 lncRNA downstream 534815 36080635 ~ 36105419 (-) True G56611
TU70714 lncRNA downstream 750552 35889450 ~ 35889682 (-) True G56570
TU70707 lncRNA downstream 826020 35782424 ~ 35814214 (-) True G56564
TU70692 lncRNA downstream 1049142 35590768 ~ 35591092 (-) True G56549
TU70874 lncRNA upstream 205817 36869548 ~ 36871823 (-) True G56710
TU70924 lncRNA upstream 504263 37167994 ~ 37168244 (-) True G56742
TU70983 lncRNA upstream 537301 37201032 ~ 37267831 (-) False G56795
TU70984 lncRNA upstream 537301 37201032 ~ 37226002 (-) True G56795
TU71004 lncRNA upstream 617012 37280743 ~ 37281091 (-) False AMCG00009409
AMCG00009384 mRNA downstream 16737 36620406 ~ 36623497 (-) True AMCG00009384
AMCG00009385 mRNA downstream 63761 36576207 ~ 36576473 (-) True AMCG00009385
AMCG00009383 mRNA downstream 89548 36536166 ~ 36550686 (-) True AMCG00009383
AMCG00009374 mRNA downstream 731722 35907212 ~ 35908512 (-) True AMCG00009374
AMCG00009373 mRNA downstream 835149 35423478 ~ 35805085 (-) True AMCG00009373
AMCG00009388 mRNA upstream 69448 36733179 ~ 36767720 (-) True AMCG00009388
AMCG00009389 mRNA upstream 176385 36840116 ~ 36840337 (-) True AMCG00009389
AMCG00009391 mRNA upstream 209941 36873672 ~ 36874729 (-) True AMCG00009391
AMCG00009390 mRNA upstream 236562 36900293 ~ 36921139 (-) True AMCG00009390
AMCG00009394 mRNA upstream 425052 37088783 ~ 37097327 (-) True AMCG00009394
TU70712 other downstream 767637 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 1100424 35538887 ~ 35539810 (-) False G56546
TU70686 other downstream 1100424 35538887 ~ 35539810 (-) True G56546
TU70688 other downstream 1100424 35538887 ~ 35539810 (-) False G56546
TU70552 other downstream 2361054 34239484 ~ 34279180 (-) True G56438
TU70990 other upstream 552229 37215960 ~ 37220076 (-) True G56800
TU71449 other upstream 1916554 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 2171585 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 3484994 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 6005396 42669127 ~ 42673707 (-) True G58025

Expression Profile