RNA id: AMCG00009388


Basic Information

Item Value
RNA id AMCG00009388
length 2655
RNA type mRNA
GC content 0.53
exon number 14
gene id AMCG00009388
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 36733179 ~ 36767720 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGGGGCAACGAGGTGGACCTCTCTAATAATAACATCACCCCTCTATGGAAGAGGAGGTCTGCAAACCAGTCCGGGCCCAGGGACAAGCCCAGGCCTCTCAGCTACCAGATTGGTGGGGTTTTAATGACTGATTTTCCAGTGGAGGACCGATGTGCCTTTACGTTGACGCAGCCTGCCGAGAAAATCGTGGCTTCCCCAGGAAATACAAATGTCTTCAAGCACGTCTTGAACAAGCCAACCCGCAAGACGAGAGTGGTCAGGAGCATCAGCATTGGCCATTTGTCCAACAGGAAACTGTCTCTGCCCAAACGCAAGTCAGAGCCCAGCAAGCAAGTTGACAACCGGGCGTATCAAACTCTGGACATAACTAAAGGTGGGGACACCGGGTCCCGCTTCTGTCAGGAGAAACGGGTCTTAGATGAAGGGAAAAAAGATTTGAAAAAGCGACTCTCTGTCCCCGTGACGTTGACCTCGCAGAAGGACCAGATTGTATTCAGCTCCAGCGCGGGGGATTCGCCTACGGGGAGAGCCCCCACGCCGccatgcaacaacaacaatgtccTCTCCATCCCCCATCAGTCACCCCCTTCCCCCAGGAATGCGGGCAGCCCCTCCACGTGTGCCCCGGCCCCGGTGCCTGCCCCTGGGGAGAGGGTGGCGCTGCACAGGCAGTCGTCTGGCACTGCCCTGAGCCCTGACAAAGGCCCCTCCATCATGTTGAGCACAAACAGCCCGGCGGCACTCAAGATGGGGAAGCAGCAGATCATCCCCAAGGGGCTGGCTTCAGACATCAGACTGAGCAAGAACAGCCAGGGCGGCCACAGTCTCCTGGAGCCCACCAAGAGAGCGCTCCGGGCCCTCAGCTTAGTAGAGACCAGCAGCAAGTCGCTGTTCTCCATGGGCGACAAAGAGGGGGAGGCAGATGCAGACCTGGACAGCCCGGGGACTCTGAAGAGGGGGCTGAGGTCCACTTCTTACAGGAGGGCAGTGGTCAGCGGGATTGACCTGGACAGCTCTGCCCAAGCCGCTGAGATGAAGGGCAAGCGGCTGTCGCAACCCATCTTGAGAGCTGTGGAGGAGGACAAGGAGAAATTCGCCAGTCTGGGAAAGGGCAAAaagaaaggaTTGCCGACACAGAGAACCTTTGACAGCGAAGAAGATGAGGTTCTATACCAGAACTACAAGGAGAAGGCTTTGCATAACGATTCTGACGAGGATGCCGAACCTAAGGAGCAAAAATCTGATGAAAGGATTGTTGTTCAATACAAGCCACTGAGGTCCATGTGGAGCCAGCTCACTGTGgtaaaaaaaaatggaatatcCGAAAGCCTGAACCAGGAACAGAGGAAGAAACAAGAGGCTATTTTCGAAGTGATTTCGTCTGAGCACTCCTACCTCCACAGTCTGGAGATTTTGATCCGGTTGTTTAAGAACTCTAACGAGCTGAGCAGTACGATGACCAAAACTGAGAGCCACCACCTCTTCTCCAACATCGTCGATGTCTGTGAGGCGAGCAAAAAGTTCTTCAAAGAGCTGGAGGACAGACATCAGCAAAATGTTGTCATAGATGACATCAGTGACATTGTCGAAAAACACACCACTCTAACCTTTGAACCTTATGTGACGTACTGTTCCAATGAGGTGTACCAGCAGCGGACACTCCAGAAGCTTCTGACTACAAATGCAGCCTTCAAGGAAGTGCTTTCTAAAATTGAGAGCAACCCTGACTGCAGGAACCTCCCCATGATCTCCTTCCTCATCCTTCCAATGCAGCGCGTCACTCGACTGCCTCTTCTGATGGATACCATCTGTCAGAAAATACCAAAAGACACTGCAAACTATGATACCTGTAAAAACGCATTTCTGGCTGTGAGCAAGTTAGTCCGATTGTGCAATGAGGGAGCCAGGAGGATGGAGAGGACAGAGATGATGTACACTATAAACTCCCAGCTGGAATTTAAGATCAAGCCCTTCCCCCTGGTGTCATCGTCTCGCTGGATGGTGAAGAGAGGGGAGCTCACGGCCTTCGTCGAGGACAACGGCATCTTCTTAAAGCGCACATCCCGCCAGCAGGTCTACTTCTTCCTGTTCAACGACGTCCTCATTGTCACCAGGAAGAAAAGTGAGGAGAGTTACAATGTGATCGATTACGCACTGAGGGACCAGATCTCTGTAGGCCTGTGTGAAGGTGAGGAGGTGAACCTGTCGCCTGCCAAGACCTCGCCTGGGATGCTGTACTCACGCCAAGGATCAGTGAATCACGTCTTCAGGCTCTCATTCCTTAGCAACCATTCCAACGAGAAAGTGCAGATGATCCTCGGAGCAGAGCTGCTGAATGAAAGAGCCCGCTGGATTAGTGCCCTGGGACAAAGCAGCAGCGATAAGGAAACCGACAGGACAAAACTGATGCAAGTGGAGATCACCAGGACCTACACAGCCAGGCAGCCAGATGAGCTGTCGCTGCAGACGGCTGATGTGGTGCTGGTGTACCAGAAGGTTTCTGATGGCTGGTATGAAGGGGAGCGCCTGAGAGACGCAGAGCGAGGCTGGTTTCTGTCCGAATGCGCTCGTGAGATCACCTGCCAGGCCACCATCGAGAAGAACATGCAACGGATGGACCGTCTGCTCGGACTGGAAACCAATGTTTAA

Function

GO: NA

KEGG:

id description
K13744 ARHGEF26, SGEF; Rho guanine nucleotide exchange factor 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70758 lncRNA downstream 339661 36096808 ~ 36393518 (-) True G56612
TU70757 lncRNA downstream 627760 36080635 ~ 36105419 (-) True G56611
TU70714 lncRNA downstream 843497 35889450 ~ 35889682 (-) True G56570
TU70707 lncRNA downstream 918965 35782424 ~ 35814214 (-) True G56564
TU70692 lncRNA downstream 1142087 35590768 ~ 35591092 (-) True G56549
TU70874 lncRNA upstream 101828 36869548 ~ 36871823 (-) True G56710
TU70924 lncRNA upstream 400274 37167994 ~ 37168244 (-) True G56742
TU70983 lncRNA upstream 433312 37201032 ~ 37267831 (-) False G56795
TU70984 lncRNA upstream 433312 37201032 ~ 37226002 (-) True G56795
TU71004 lncRNA upstream 513023 37280743 ~ 37281091 (-) False AMCG00009409
AMCG00009382 mRNA downstream 69448 36640234 ~ 36663731 (-) True AMCG00009382
AMCG00009384 mRNA downstream 109682 36620406 ~ 36623497 (-) True AMCG00009384
AMCG00009385 mRNA downstream 156706 36576207 ~ 36576473 (-) True AMCG00009385
AMCG00009383 mRNA downstream 182493 36536166 ~ 36550686 (-) True AMCG00009383
AMCG00009374 mRNA downstream 824667 35907212 ~ 35908512 (-) True AMCG00009374
AMCG00009389 mRNA upstream 72396 36840116 ~ 36840337 (-) True AMCG00009389
AMCG00009391 mRNA upstream 105952 36873672 ~ 36874729 (-) True AMCG00009391
AMCG00009390 mRNA upstream 132573 36900293 ~ 36921139 (-) True AMCG00009390
AMCG00009394 mRNA upstream 321063 37088783 ~ 37097327 (-) True AMCG00009394
AMCG00009407 mRNA upstream 507742 37275462 ~ 37277549 (-) True AMCG00009407
TU70712 other downstream 860582 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 1193369 35538887 ~ 35539810 (-) False G56546
TU70686 other downstream 1193369 35538887 ~ 35539810 (-) True G56546
TU70688 other downstream 1193369 35538887 ~ 35539810 (-) False G56546
TU70552 other downstream 2453999 34239484 ~ 34279180 (-) True G56438
TU70990 other upstream 448240 37215960 ~ 37220076 (-) True G56800
TU71449 other upstream 1812565 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 2067596 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 3381005 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 5901407 42669127 ~ 42673707 (-) True G58025

Expression Profile