RNA id: AMCG00009396


Basic Information

Item Value
RNA id AMCG00009396
length 8733
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00009396
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37133229 ~ 37145082 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGTGTTCAGCCCAGGAACTGTATACCTACGGTGGAGGACACTGgcatttttatgcttttttgcCAAAATCTTACAGAAAAGCAGTGGCTGTCCAAAGTCATGCGCCTGCTACATTCCCACCGAAGTGCACTGTACCTTCAGATATCTCACAGCTATACCAGGCGAAATTCAGCCAGATGTGGAACGCATTAACTTGGGGTACAACAGTTTGactacattaaaagaaaatgatttcaCAGGGCTGAAACACCTGGAATTGTTAATGTTGCATAGCAATGCAATACAAACCATAGAAAATAAGGCCTTGGGCGATTTAAAGTCTTTACAGGTTTTGAAGATGAGTTACAACAAAGTTAAAGAAATTAACAAGGAAACATTCCGGGGCCTACAGAGTCTGGTAAGGCTGCACATGGACCACAACAAAATAGAGTTCATTAACCCTGAAGCGTTTTTCGGACTCACTGCACTGAAACTAGTGCACCTTGAGGGGAACTTATTGCAGCAGCTTCACCCAGACACCTTTGTCACCATGCGCTACAGCCAGATCTTTAAAATATCATCCgtcaaaaacattttcctctCAGACAACTCCTTCAGGAGCCTCCCACCAGAGCTGTTCTCCTATTGCACTGGGCTGGAGAGTGTCTACATGCATGGGAACCCGTGGCAGTGCGACTGCTCCATGCAGTGGTTTGTACAGTGGGCCGAAGAGAACCCAGgggTTCTGAAGTGCAAGCGAGACAGGAGGGGTCAGCAGTGTCCTTCCTGTGAATCCCCAGCTGCATCCAGAGGAAAAGATATCGCCCGGCTGCCTCCAGCCACATTGTCCTGCTATCAGCCCTGGATACATCCACATCTCAAACAGAAGAATATCAGCATTGATCAGGGGGAGTTCACTCCTGTTTCCTCCAAGGACTTTATTGCGCCCATTGGGTCCATGGTGCTGAACATGACAGATCAGTCTCAAAATGACGCGAGTGTTATTTGCACAGTTCAAAGGCCAAATGCAATGACAGGTGTGTCATTAGAGGAAAAGGATGACATGCTGATCCTCAGAGCGTCTTTAGCCACGTTCCTGGTCTGCAATATTGACTATGAGCACATCCAGCCACTTTGGAAGATACTGGCCACCTACAGCGACATGCCCATGAGACTGGAGAGAGGGCTACTGCTTACAAAGACACCATCAATGATTTACAAATATCACCAGAAGCAAGCTAGCGAAGAAGAGGATGTCTTCACTGCCATAGAGGCCGAGGTGAAAGCAGACCCCATGTGGCTCATGCAAGGAGAGTTCACCTTACAGCTGGACAGGGCAACTACGACATTCACCACTTTGCACATCAAATACTTCACAGACTTTCAAATGAtactagaaaataaaataccaaagtCACAGAGATACAGCTGGGCGTTGATCAGGAAAGACAATACCACGAAGACGGAGCACTCAGTTCTGATTGGAGGGACAGCAGAGCTGGAGTGTCAAGTCTCTGGGGAGCCAAAACCCTTGATCGAGTGGATTTTACCAGACGGGAGCAAAGTCCGCGCACCGTATATAAGCGAGGACAGAAGGATTATAATTTTGGATACTGGGAAACTTACTCTAAGAGCAGCAGACAGCTTTGATACAGGGCTATACCGTTGCATAGCCACAAACTACCTTGATGCAGATTTGCTTACCTACAGGATTACAGTTGTAAATCCAGAGGTGGAAGAAACAGATGTAAATGGTGTAAAAATCGCCCAGTCTCTGGGCAGCAGTCTGTATCTTCATTGTGGCTCTGAGGGCAACCCTGACGCTACCATTAACTGGATTTTACCAGACCATTCAGTGTTAGATAAGTCTTTTGGACAAAGAAAACTTTTCCCAAATGGAACCTTAGCCATTGATGGACTTACTGAGAGGGACCGTGGATTTTACATATGTCTAGCAGCCAATCACATGGGGGTGGATTTTTTGTTATCAAGAGTAATGCTTTCAGGTGCCGCCAGGAATAATGTAGCGTTGAAGGAAACAAAGAGGATCCTGTCAGAAGGCGAAGGGTCAGGAAATGAGCCTGACTCCCCCTCAGAGGAAACTGAGGAAAACTACAATGCTCTCTCCCCAGGTGTTTCCAACCGGACCAGACAAGAATCTAGGACTATTACTTCAGACAGACCTTACCCCAGAAGGAGAATAACACAAGGCAGAACCTCTGGTGATTTGACACAAAGAAGAAATGGATTTTCAAGCAATACACGTAGAGTGGGGGGAAGAACTACCTTTGATAAAGCCTTAAGGAAAGTAGATCCACAACAGTGGaccaaaatcatgaaaaaagcacagaaacataAAGCTTCTGAGGGTCAAGGGGAAATCACAACCAACGGGATATTATCAAAAACTAGTTCAGGGCTCTCTGGGGATGGAGAAGAAGCCTCGGGAGATGCCTTGACAGAGGACGACTTTTTGGTAATAGCAATGAGCCCTGCTTCAAGTACTATACAAAATCCAAACCAAGAGACAACCACTCTTTATGTCCAAACATATGCACTGCCAATAGCGTCACCAGCCACCCCTGTCACAATAGGTCACCATGGCAATGCCAACATACTGACTACAAAGCCAACACCATTAACACCTACACTGCACAGTACTGTTACTAGCAGTCCAGGTTTAAATGTAACAGATGAACttgacaaaaaaacagaccagCCTTTGCCCCAGCCTGTTACGCTGAAATTGAGAATAACCGAATCAACAAGTGAAATGCAACCGAAGTTTTCTAGCAACACAACAGATACAGCAGCCAGTGTTGTCCCATTACTTATGACTTCCATGATTGACAAACCTGGGCCTGTGCCAGAGCCTGTAGTTCATACTGCAACGTATCCCAATGGAAAAGCATCATTCACGGCCGTCACAACCTCAGAAGGGGAAAATGATGAAATCCTGTTTCACACCACACAGAAAATCACCTCCCCTCGTCTGCCTTCGGGTTCTACCATAATATCTCACCAGCAGATCCAGATTATCAGAGGAGACACGGCTCACTCAGACAAGGTACGTTctggcaaaaaaagaaaatttcCCAGTAGGCGAAGAATTATCAGACCAAACAAGATAACAGATATCTCTGCGTATTTGAATAAATTCTCAAAATCTATCAAAAAGCCTGCTGCGCATGACAAAGACAACACCACCATGCCAGCCACCATAGAGCTAACCACAAAGTGTGAGTGCCAGATTACAGACATGCCATTGGGCAGTTCATTAGCAAAGCCAGCAGCAACTGAAAGCGATGCAACTAACTCTCACAGAAAGACAAAAGGTAGCATTAGTGTGGTCACACCAACCTCAGGACCCAATATCCAGAGTTCCACTCAACTTAAAACAACTAAACCATGGCCAGTGACTTCAGAGAAAGTATTAGATACCTCCACATCATCTCCACTTACAAGAATTGTCACATCACAGACACAATTTGTAAAAGTCATAACTCAGTCTCCTACAACAGAGCCCATGGCTACTTCCAAGTCAACCACAGGAGCACCAGGCTCTTTCAAAAAGTCTGCCTACCCTCAGGCTGAGCACACAGAAGCTCCCAAGTCAGCTAAAAGCACAAGCAAACCTGACAGATTCTACACAACAACCACTAAAGCCAGCATATCAGCCTCCAAAGTCATCCGAGGTAAAATTCCTTGGCATAGACTTTTTGGGAACAAGCCAAGCCAAAAAGAATTACTTAACAGGTTGCGTAGGCCAGTCAAGCCAATAACCATCACCAAGAGACCCCCTGCCAGAATGACCAGCACCACTGCTCCAGCACAGATATCATCTGTCCTGCCAACAACCAGAGCCCTGGCTTCACCAATTACAAACTTACCAACACTGACCGAAAATAAGGCAGTCATCCAATCATCGGTGACCTCTTCTGATTATTCCTCTGGGTCTGCGTCCACCACTGAGGCTCAGCCAGCTTCAAAAGTCATAATTTCACCTGTGACCGCCAAGCCAAGGGTTAAGGATAAGACTGCAGGCAGCAcgtataatgaaaacaaatctgaagtcTCCATGGCAACAACTACAGCTGCAAGAAAGGCATCTGCATCCGGTAGCAACACTAAAACAAGAACAGGAACGTTCAGAAAGCACATGGGACTTCCAAGAAGAAAAGGATTTAGACGGATGAGACCAGGCAAAAAGACCACGACAACCACGCAAACCACAACGGCTCAGATCAAGGAAATGGAAGCTCCTGTTACTTTGAAAGCCACCACACCAGCAACCAAAGCAGTCCAGCCTGTCATTACAAGTGTACTCTCAAAGCCATATCAGCCTGTATTTCCAGTCATTATGCCTTCTGCAGAGGAAGAACATAAAGCTTACAGTACTTTGACTGCAAAACCCACAACCGCAGCTTCTTCAATCAGACATTCCAGAATTGAAACGAGCATTAAATCTGAAGGAAGAGGAAGTGCTGCCACCTCCCCATCCCCTAAAGCAGGATTATTAACACCTGTCCAAAccaaaacagcaacagaaaaagcTGTAGTAGCACCCGTCAAAACTACAACCACAGTTAAGCCCACAACTCCATTTATAACCAAGTCCATATCCACCACTACAAGGCCAGTTACAAGAACAAACCTGAGAGTACCCCCCTCGACTAAACCCATCAGGTTAACAACACAAAGAGCCACTTTTAGTAATGTCACACCCACGGCATTTTCAGCTACTGTGAGAGACAGTAAATCTCAGGATGGCAGTGGCCGCTTCCTATTCAGGCCAAAATCACATAAGCCCACCCGTGCTACATTTACAAAACCAGAGAAACGGACACAATCTACTGTATCGAGCAGCAGGTTCTGGGAGAAACCTAAGTCTGAGGCCACAGCCAAAGGAAAGACTTTGATCCTTGACACCCTGACTATACTTACAGCTGAGCAGGCCTACACTAACTCTCCAGCCCCTTTCAGCTGGGATAAAGATAATACCATCGCTAACAGGTATGACAAACTCCCTGAATTTGAAGCATCAACATCTAACGTGATCGCTATGGAGCCATCGCCCAAGGACCAGCCATCGAAACCCAGAATAGTGGGGGGAAATGCTGCCAGCTTCACAGTGCTTTCCAACTCAGATGCATTCCTGCCCTGCGAAGCTATTGGAAATCCTGCTCCCACATTAAGCTGGATCAAAGTGTCCTCAGGGACTACTTTGACAATGAAGGCCAAGCGTGGAAACAGATTTGAGATGTTTAAAAACGGAACACTGTCTATTCAGAACGCCAACATTCAGGACCGCGGACAGTACCTCTGTCTCGCAGAAAACCGGCACGGGTCCGACAAGCTCCTGGTCACGCTGTCCGTGGTGGCGTACCCCTCGCGAATCCTGGAGCCGAAAGTGAGAGATATCAAATCCCACTCCGGAAACACGGTAGAAATCAAATGCAAAGCTGAAGGCAGGCCCATTCCTCTTGTGTCTTGGATCCTTGCGAACAAAACTGTGGTCAGGGGATACAGCTCACGCGAGAGCAGAGTGGCAGTGGCAGCAGATGGGACGCTAACCATAAAGGAGGTCTCTGTGTACGACAGAGGTCACTATAAATGTGTAGCCAGCAATCCGGCCGGGGTTGACACCGCTACAGTCCAGCTGCAGGTGGTTGCTGCTCCCCCAGGTATTGTGGAAGACAAAAGGCAGCAAGTCAGGGGAGAAATCGGGCAGCACCTCAAGATGCCCTGTACAGGCAAGGGAAGCCCTCAGCCTACCATTCACTGGGTCCTTTTCGACGGGACTGTGGTGAAGCCTTTGCACTACATCAACCCCAAGGTGTTTGCCTTTCCCAATGGAACGCTGTACATTAAAGACCTGGCAGTGTCCGACAGCGGCAAGTACGAGTGCATCGCCACAAGCTCCACGGGCTCTGAGAGACGAGTGGTGAACTTATTGGTGGAGCAGAAGGAGACGGTGCCCAGAATAGTGACCGCCTCCGACCGCAGGACCGACCTCAATTATGGTGACCAGTTGCAGCTGAATTGCTCGGCGTTTGGAGACCCCAAACCCAGGATTATGTGGAGACTACCTTCGAAAGCTGTTGTGGATCAGTGGCACAGGATGGGAAACCGGATCCACGTGTTGCTCAATGGCAGTTTGATCATTGATGCCGTGAGTGAAAAGGACGCTGGAGACTACCTCTGCGTTGCCAGGAACAAAATCGGCGATGACTTTCTACTCATGAAAGTAACTGTGTCCATGAAACCAGCAAAGATAGAATACAAGCCCTTCATTAAAAAACAGGTGACGTACGGCAATGACCTGAAAGTGGACTGCAAAGCGTCTGGAGCTCCTGAGCCAGAGATCTCATGGGGCTTGCCTGACGGAACCCTGCTGAACAGTGTTCTGCAGGCCGATGACAATGGGGGCAGGAGCCGGCGCTACGTTCTGTTTGACAACGGAACCCTGTATCTTAATAAGGTTGGGATGTCCGAGGAAGGAGATTACACTTGCTACGCAGAGAACACATTGGGCAAGGACGAGATGAAGGTCCACATCACAGTGGTGACAGCAGCTCCTCGCATCAAGACGCCACAAAATACGTACACCAAAGTGAGCTCGGGGGACAAGGTGATGTTTGACTGCGAGGCCATGGGGGAGCCAAAGCCAAAGATCCTGTGGCTCCTGCCCTCGAATGACATGATTGCAGCTTCCAATGACCGGCATCTGATGCATGTCAACGGCTCCCTGGCCATTAGGAACGTCAAAATAACAGATGCTGGGGAATACGTGTGTGTGGCACGCAATTCTGCTGGGGATGACACCAAGGTTTTCAAATTAGAAGTCAACGGAAATCCACCCACAATAAATGGTTTGtacatgaacaaaacaatagTGAAGGACACAGCCATAAAACACACCAGGAAATTAATTGACTGCAAGGCTGAAGGGACTCCTACACCTCAGGTCATGTGGATAATGCCAGATAACATTTTCATCACCGCTCCCTACTACGGCAGCAGAATAATAGTTCACAAAAACGGTACACTGGAAATTCGCAACGTCAGGCCTACGGACACGGCCGAGTTCATCTGCGTGGCACGTAACGACGGAGGCGAGACTGTCATGATAGTTCAGCTTGAAGTCACAGACATGCTGAGAAGGCCCATGTTTAAGAATCCATTCAATGAGAAAGTCATAACCAGAACAGGCAAAACCACCATCTTGAATTGCTCAGCTGATGGTCACCCCCTTCCTGAAATAATCTGGCTTCTACCCAATGGGACACGATTTACCAACAGCCAACGGATTTTAAGGTACCAGCTGGGAAACGACGGCACCTTTATCATTTACAACCCCAGCAAGGACGACGCCGGTAAGTACAGGTGCGCTGCCAGGAACACAGTTGGTTACATTGAGAAGCTGATTGTTCTTGAGGTGGGTCAGAAGCCTTACATACTCACCAGGCCAAGAGGCATCATTCGAAGTATCAGTGGAGAGCCGCTATTCCTACACTGCCTCGCTGACGGCAGCCCCCGCCCCAAAATCACCTGGACGGTCCCCGGAGGACACATGCTGTTGAGGCCCCAGATAAATGGGAAGTTCATGCTCCTCGACAACGGGACCCTCGTCATCAGAGAAGCCAGTCTGCATGACAGAGGAAATTACATTTGCGCAGCGAAAAATGATGCAGGGGAGGCCACGGTTACCATCCCTGTGATTATCATTGCCTACCCCCCTCGCATTACCAATGGCCCCCCGCAAAGTGTCCGTGCACGGAAAGGGGTGCCAGTACACCTCAACTGCATGGCCATCGGGATTCCAAAACCCGAAATCACGTGGGAGCTGCCGGACCACTCGGTGCTGTCCACCGCCGGCAAGGGTCGGCCCACGGGCAGTGAACTGCTCCACCCGCAGGGCACCCTGGTCATTCAGAAGCCCACGCATTCCGATACCGGCACCTACAAGTGCATCGCCAGGAATCATCTCGGCACTGACTCTAAAATAACATACATTCAAGTGCTGTAACACAGTTCTCTACAAATGGatctcttttgttttgattgcaCATGTTtggccatttttttttattttttttttaaatgaccgtTAACAGTTCTTATTTCTGGAACTTATAAACTTCTTAATTCTCACTTTTACAAGCAGTAAGcagaaacaaacagcaaaacaaagagaaaaaaagtgggagagaaagagagattgtACATTGGACTGTGAATTGGCAGAGAATCCAGCaaagtgattatttttatagtaaaaatgttttgcatttaaggCTTCAGGGCAAATGAAGTCTGGAGTGGAATTACATGTGGAAAGACTGCAGGTTTTTAACATCATCAGAGATATTGTTACAGTTCTGGAATGATTGTCTGGAAACATTAATGGTCTTTTAAAGTCCCATAGGAATGTCTCCCAAAGTGCATGTTTCAGATAATATACACAGTAGACTTACTTATGAACAATTTTGGAAAGGCACTGTGGATGTATCAACAGTTAccatttttttccatattttacagtattaaactgcattatttGGAGAGGGCTGGATATATTTTCTTACAGATTTTACACTGGAAttaccttttattttgtaatagcTAAATACTTCAAACAGAATACACCTATATTAAGaattataagaataatattgtcatgttatttttcttgtatctTTTCAGTTTCGGCTTCCATACTatgctgccattttttttataaacattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70891 lncRNA upstream 103687 37029206 ~ 37029542 (+) True G56712
TU70857 lncRNA upstream 158168 36900293 ~ 36975061 (+) True G56694
TU70862 lncRNA upstream 257831 36875078 ~ 36875398 (+) True G56698
TU70776 lncRNA upstream 501415 36627195 ~ 36631814 (+) True G56629
TU70929 lncRNA downstream 43486 37188568 ~ 37188778 (+) True G56747
TU70938 lncRNA downstream 48644 37193726 ~ 37195088 (+) True G56754
TU70962 lncRNA downstream 140761 37285843 ~ 37291665 (+) True G56775
TU70966 lncRNA downstream 148821 37293903 ~ 37297002 (+) True AMCG00009404
TU71031 lncRNA downstream 314960 37460042 ~ 37463505 (+) True AMCG00009415
AMCG00009393 mRNA upstream 45636 37086517 ~ 37087593 (+) True AMCG00009393
AMCG00009392 mRNA upstream 47135 36909096 ~ 37086094 (+) True AMCG00009392
AMCG00009387 mRNA upstream 401986 36704289 ~ 36731243 (+) True AMCG00009387
AMCG00009386 mRNA upstream 435113 36690833 ~ 36698116 (+) True AMCG00009386
AMCG00009381 mRNA upstream 521300 36576217 ~ 36611929 (+) True AMCG00009381
AMCG00009401 mRNA downstream 39542 37184624 ~ 37192497 (+) True AMCG00009401
AMCG00009399 mRNA downstream 47423 37192505 ~ 37206412 (+) True AMCG00009399
AMCG00009402 mRNA downstream 70949 37216031 ~ 37216975 (+) True AMCG00009402
AMCG00009403 mRNA downstream 72004 37217086 ~ 37234594 (+) True AMCG00009403
AMCG00009397 mRNA downstream 99151 37244233 ~ 37249694 (+) True AMCG00009397
TU70668 other upstream 1743902 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3101784 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3114414 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 4967864 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 7137791 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 215019 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 465261 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1297173 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2289818 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2802924 39948006 ~ 39949200 (+) True G57430

Expression Profile