RNA id: AMCG00009398


Basic Information

Item Value
RNA id AMCG00009398
length 3752
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00009398
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37268364 ~ 37277885 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCTCTGATAAGATACAGAACAAGAAGGAAATCTGGCTAGGGCATTTCTTTAGCATACATTCAGCTGGAAGAGATTATTCACAGACAACTGGCAATGCAAATGGCAATACAGAAATGTACCGAAAGAGTAAGTTGATTaaatcaaacatgttttttatccCGATGTGAAAACACAGTTAAAACGCGACTGAAGAGCAGAAAAATGGAGGATGACAACCAAACTGCACAGAACTATACACCCCTTTCAGACTGTGAGGAGAGGTCACCGCCTAATGTCGGTCAAGAAGAAAACACAGTGGAACAGCAGCCTAATTCACAAGAATATTCAGAGGATTTTCCAGAGAGCAGACTTGTCCTCCTTCGCCAGTCTCTTCAGAAAAAAGCTGCTCTTATTACACAACCAGAAGGTGACTGGCTGCAAGACCATGGCCCTCTCGATACTGATTCAGTTTCTTCCTGCTCAGACCAGGAGCTAAAGGAAATGGGCATTTTCACTGACATGCAACTCAATGAAGAGTTCCTGCATCTGTTGCAACAGCCCCTGCTCCCAGGTGTCGGAATGCCAGCTATCCTGAGCTACAAGCAGGAATCCAGGGACAGGCCCACGGATCCCCGGACCGTTCCCCCACAGATTTTCTGCTGTCCGCAATACCAGCACCTCTATGAGTTCCTAGTACAAGAGAGAGCAGCCATCCTTGAGAGGCAGGAGAGGGACAAGGCCAGCGTTGTCCTTCATCCTCCTGATGaagacatggaggagagagagagagccaagGAGAGGGCAGCACAGAGACTTCAAGAGAGAGCACTTGAGAAGTATTACCAGACGGCAGACCTAAACGACTCCATCCCCAACAGCTACTCCAAATCCATGAATACCATCAGCTATCAGCTCTCCAGCTGTGCGCCAAGAGATGGCAGCTGGACAGTGAAACAGGAGGTAGTGGATGAGGAAGAGACTGAGCCAGAAGAGGACAGCCTCTTCACATTTGAGGAAGACTTTACTATAACACAGCGCAAGgAGAGCATTCAATTCACAGAGAAATATTACACAAACGGAAACAAGTTCCTGACTGCCTTCCCCGATGGATCAGCTCAGGTCCTATATCCCTCAGGAAACATGGCAGTGCTCATTATCGTCAATGAGAAAAATGAATTTGCAGCCATCGTACAGGAGGACAAAGCTGAGGCAGCTGCTATTCAGGCTGTATTCAAGTCAAAAGGGAAAGCAACTTGCTATCATCCCAATGGCAATGTTTGGTTGAGTATCAATGTGTTCGGAGGGCTGTGCTCAGATGAGCACGGTAACAAGCTGAAGACTTGGCGGTGGAGCGGAGCCCTCCCCTCCGACAGACCAGCTCCCTTCAGACCCATATTTCTGTCGCTAAACCAGCGAGTTGGCGTCCGCGTTTTGGCACAGCAGAAAATCTTCATCTCCTTTCTGGCCATGGGGCAACAAGCCAAATTCAACGTTGGGACCAACATACAGTGCAAGGAAGCCAAGGCGGTTCTCCCTCCCTACCCGCTTATATCCCAAGATGACCTCTTCCTGCTCGCTGGGAGAATAAAGCTGCACACAACTCTGCACAAGCTGCACAACTGCCTGCGCTTCCCCACCAACACACACCTGCAAAGGGCCAAGCCCCCGCTGCACCTGATCTCACTCAGCAGGAAGCTGCTCAGCCTGTGCGAGAGTCTGAAGATGGAGGCAGCCGAGACTGCGTTTATAAAGGCCTCTGTGAAAGACTGTTTGGGATAGTCAGCTGAAAACTGCTTTTGTAACACACTCGCACGAGAATAGTAACGACGCATCTGTGCGTAGAAATAGAATCCATTTTATAACAGCAATTCTTTGTCGatggtattattttattgccagCTGTATCGTTTCATAGACCTCAACTAGCACTACCCTTGTCATAACCTACCTAAAATAGCACTGGGTAGTTAAAAGCCAGCCCTAGGACTTAAGTTAAGTAAGTATAGATCTCTCAAGTCATTTTCAATACATCAgctgtgcattttcatttgatacACAAATGCAAACCCTGAAGACACATTCCAAGTGTAAGAgttcacaaaacataaaaagcacacaaaaaaagcaaaccagGAAAAGTGACAAGTGAGAGAAATTGTCCTGACGCAAAAAGGTTTCTTCCTCCACTGCAGGGCAAAGCAGAGACATGCATACACTGGAAAATAATGCCATACCAGAGTCTTAAGTTGTAAACCACCAGAGACCAGCTCGGTTTGGGAAAAGCCAGGCAATTGATTAGTTTCTATCACATAATCTGACACTTTCAGCCTTGGTCCTGGGGAGCCACAATCCTTCAGTTGATATAGGTAGCTTGAAGTGGTCAACAGGTGAAGACCCGGTAATCTGCACAACCATTTCACATTTGGTTATTAGAATGAAAACCAAGAGGCCCACATGGCTCCCTAGGCCATACCGCTCCACTGAAGAGATGTGTAGACCACCTCCTGGCCATCGGTGTCTGGGGAGCACAGTAAAACAGTCTTCTTGACATTCGCTCCGAGCCGGGATAGCGCCAGGAAGTCACTGACGGGGGTCTCGCTCTCCATGGGGAGACACACCGCGATGAAATGAGCGTGGAAACGGAGGGGGTCGCCTGGATACACAAGGTAGTCTCCTCCAAATTTCCCGGCAGAAGTGATGTAATACCCCCTCTGTCTCAGATCCCGAAACACCTGATACCTGGCTTCGGTCCTCTCATCCCGTGGGTGCGGCCAGTCTGCAGCCAGCCAATGGTGTTCCTCGGGGCTGTGGGACAGGCAGGCCCGGGCGGTGCAGAGCTGCACCATCATGGCCGACTGAGGGAAGGAGAAGGAGCTCTGCAGGGAATCCAGCCGAGCCCGGAGAGACCGATCGGCCTTCACACTGGATCCGTCTTTCAGCTGCTCCTGCATCACCCTCTCCAGCACTTGCTTCTTGTCCTCCAAGGCCAGCCGCCTCTGCTCCTCGTAGTTGCGCTGCAGCCGGTCCCTGTACATCTCCAGCTCGGTCCTCGGACCCTCTTCACTCTCGGGCTCCGGCGCGGCGAGCAGCACAGCCAGCCCGGTCTCGGCCATCAGACGCGCCTCCTCCGGCAGCAGCTGCGCCGGCCTCCCCAAGCGGCTGTTCTGCCGGGGCTGCCTGGGCAGGGAACCCACCATCGAGCCCACGATGCCCCGTCTCTCTCTGGCCGCCCTGATATCGCCCGACCGCCACAGCAGTGGGGTGGCGCCGGAGAAACACACCCGCAGCGGCCGGCAGTGCGTCCCCGGCCCAGAGGCGCTGTCCACCTCCGAGCCCGGCTCTCTCTGCACTTCTGCATCCCGCCGTCCTCCGCCGCTCGGCTGTCCCTGCAGAGGAGCTTTTTCTTCCGAGGCGGCATCTTCGCTGGGCTCCATCGTTTCGCCCCCCTCTTCCAACTGGATCCGTCCCGACTAAtagttttgtgttattatttcctTGTTACTGCATCGCACGTTGTAAATATGATCTGCCCTCAGCTACACAAACTGCGACTGCGTTCACTGTATGGTTAGACAGCACAGTTATATACAATAAACTCACACAGGTGGAAACTCGCCGTACAGACACCACGTGTGCTGCAAAACGCAAACATCGCCTACACTCCCGGatcaaaaacacttttttggAGAACCGCTTAGTCCTGGATACAGCACATTCAAAAATCACATCTAAATTCAATCcaagcacttttttttcccccaatttaGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70938 lncRNA upstream 73276 37193726 ~ 37195088 (+) True G56754
TU70929 lncRNA upstream 79586 37188568 ~ 37188778 (+) True G56747
TU70891 lncRNA upstream 238822 37029206 ~ 37029542 (+) True G56712
TU70857 lncRNA upstream 293303 36900293 ~ 36975061 (+) True G56694
TU70862 lncRNA upstream 392966 36875078 ~ 36875398 (+) True G56698
TU70962 lncRNA downstream 7958 37285843 ~ 37291665 (+) True G56775
TU70966 lncRNA downstream 16018 37293903 ~ 37297002 (+) True AMCG00009404
TU71031 lncRNA downstream 182157 37460042 ~ 37463505 (+) True AMCG00009415
TU71098 lncRNA downstream 270428 37548313 ~ 37553141 (+) False AMCG00009429
TU71111 lncRNA downstream 333370 37611255 ~ 37616696 (+) True AMCG00009428
AMCG00009395 mRNA upstream 2341 37262551 ~ 37266023 (+) True AMCG00009395
AMCG00009400 mRNA upstream 6960 37253939 ~ 37261404 (+) True AMCG00009400
AMCG00009397 mRNA upstream 18670 37244233 ~ 37249694 (+) True AMCG00009397
AMCG00009403 mRNA upstream 33770 37217086 ~ 37234594 (+) True AMCG00009403
AMCG00009402 mRNA upstream 51389 37216031 ~ 37216975 (+) True AMCG00009402
AMCG00009404 mRNA downstream 16065 37293950 ~ 37297009 (+) False AMCG00009404
AMCG00009410 mRNA downstream 20705 37298590 ~ 37302176 (+) True AMCG00009410
AMCG00009405 mRNA downstream 70223 37348108 ~ 37365721 (+) False AMCG00009405
AMCG00009413 mRNA downstream 127963 37405848 ~ 37410371 (+) True AMCG00009413
AMCG00009414 mRNA downstream 135879 37413764 ~ 37417955 (+) True AMCG00009414
TU70668 other upstream 1879037 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3236919 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3249549 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5102999 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 7272926 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 82216 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 332458 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1164370 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2157015 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2670121 39948006 ~ 39949200 (+) True G57430

Expression Profile