RNA id: TU70966



Basic Information


Item Value
RNA id TU70966
length 1212
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00009404
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37293903 ~ 37297009 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGAGACATTTGTGTCTACGTAGGCACTTCGCCGTGTTTATTACACCCTTCTGGAAAAGGACTCGCTGCGAGCGGCAAGCTGGCAATTTGCTCTCCTGACATCTTCCACAGCACTACTACAGCCGAGGACCAGCACCAAAACAATGGTGGCAAAGCAGAGAATCCGCATGGCCAACGAGAAACACAGCAAGAACATCACGCAAAGGGGCAACGTGGCCAAAAGCACGAGAAACGCTCAAGATGACAAGGTCTCGGTGGGACCGTGGTTGTTGGCGCTGTTCATTTTCGTCGTGTGTGGCTCAGCAATCTTCCAGATCATCCAGAGCATCAGGATGGGAATGTAACGCAGAGTGAACAGACGTCCCCTCCTTGTCCTGTCCACCTGACATTCCACCTTCAACCTTTCCAACAGTTACACTGCGCCTGGCCTGGGAAAACACAGCGCTCGGCCGGAtctgtcatttgtttgttttcatttttttgcgAAGTTGTGTAACTTACAGGTCATTCCCTACTCGTgccttaaaatgtataaaagccATACAATTTGTAAATTTTACATTCCAATCTAGGACCTTGATCAAgtataatatactgtaaattCCGGGTTACTTTGTAATTGTTATATAACGCTTACGCTACATGCTAAATTTGTATGGCATACTTTTGTACTTGTGGACTTGTTTTCTCTCAACAAGGTTCTTTTTACAGTCTAATCATGTATAATTTCctctttattttgaaagatgGATAGTATGTggagagaaatgtttttgtttctggctACTACCTGCAACCACTGTGGCCGTGTATTGTCCATAGCATAGCTTGGCAAAGGACCCTGCGCTCATCAAAGCAGTTACCGGTTCTGACTACAGACTACAGAGGAAGGGTTGCTTGAGtctaagaaacaaaaatcataattaataaataaataaatagtgagaATTTGaggtggattaaaaaaaatatatatatatatataaaaaaaaaaaaatccaacttgACTGGGAgcaatatgtattgatttttccaTTCCTGTAGTATTTATGCATCTTAATTCTGTGATGTTGTTCTGTATATCGGGTGATTTATCAAAGAAAGCGATACGAATAAAACCTCAGAAAAGCGGTGTGTACCATCTGGGAACAAATGCTCAACTGCTGCCACTTAAAGccccacaaaacaaataaaatgtaaaagcagacCCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU70962 lncRNA upstream 2238 37285843 ~ 37291665 (+) True G56775
TU70938 lncRNA upstream 98815 37193726 ~ 37195088 (+) True G56754
TU70929 lncRNA upstream 105125 37188568 ~ 37188778 (+) True G56747
TU70891 lncRNA upstream 264361 37029206 ~ 37029542 (+) True G56712
TU70857 lncRNA upstream 318842 36900293 ~ 36975061 (+) True G56694
TU71031 lncRNA downstream 163040 37460042 ~ 37463505 (+) True AMCG00009415
TU71098 lncRNA downstream 251311 37548313 ~ 37553141 (+) False AMCG00009429
TU71111 lncRNA downstream 314253 37611255 ~ 37616696 (+) True AMCG00009428
TU71241 lncRNA downstream 766788 38063790 ~ 38068153 (+) True G56982
TU71255 lncRNA downstream 833080 38130082 ~ 38133966 (+) True G56995
AMCG00009398 mRNA upstream 16018 37268364 ~ 37277885 (+) True AMCG00009398
AMCG00009395 mRNA upstream 27880 37262551 ~ 37266023 (+) True AMCG00009395
AMCG00009400 mRNA upstream 32499 37253939 ~ 37261404 (+) True AMCG00009400
AMCG00009397 mRNA upstream 44209 37244233 ~ 37249694 (+) True AMCG00009397
AMCG00009403 mRNA upstream 59309 37217086 ~ 37234594 (+) True AMCG00009403
AMCG00009410 mRNA downstream 1588 37298590 ~ 37302176 (+) True AMCG00009410
AMCG00009405 mRNA downstream 51106 37348108 ~ 37365721 (+) False AMCG00009405
AMCG00009413 mRNA downstream 108846 37405848 ~ 37410371 (+) True AMCG00009413
AMCG00009414 mRNA downstream 116762 37413764 ~ 37417955 (+) True AMCG00009414
AMCG00009415 mRNA downstream 125015 37422017 ~ 37460657 (+) False AMCG00009415
TU70668 other upstream 1904576 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3262458 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3275088 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5128538 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 7298465 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 63099 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 313341 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1145253 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2137898 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2651004 39948006 ~ 39949200 (+) True G57430

Expression Profile