RNA id: AMCG00009406


Basic Information

Item Value
RNA id AMCG00009406
length 2013
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00009406
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37300528 ~ 37305420 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGAGACCAGTAGCTTTCTTTGCACAGCCAGGCTTTTTCCTCCCTTTCTCCAAACCATTGGGAACTTTGTGGATCTGCACCATGCGCTCCAAGATGCCCTACCGCCTGCCCTGTTCGCCGGGCTCGTCCCCCCCGTACTCGCGGGGATTGATCGCCTATCGAGGGCGCTGCAGttcatcTGGAGCAAGTGTTGTAGCCATCGATAACAAAATTGAGCAAGCAATGgATCTAGTGAAAAGCCATCTAATGTACGCAGTGAGGGAGGAAGTGGAGGTGCTGAAAGAACAGATTAAAGAGCTGTACGAGAGGAACTCTGTCCTGGAACGAGAGAACGCACTGTTAAAATCCCTGGCTAACAATGATCAGTTGTCCCAGCTTTCTGTCCAGCTCACCAATCCCAGCAGCACTTCTCCCCAGCAGCCAACGCTCAGTGCCGCCCCCAGCGAGGGCAGCCAGCCCCCGTCTCTCCAACAGCAGCCCAACGTCTCTTCTGCGTGAAGCATCTGGTCTTCGTAGagaaaaacgaaacaaaaaaaaattataaaagaattagaaaaatacatagtcTTTATCTTGTTTGCCACCGGTGTTTTTACCAGTCTTCAAGTGAAGAGCCATGCttcagtgtgtgctgtttttttttggccttCCCAGTATTAGACAATCATCCTGCAAGAGCTTTCTTTAACTTGACATCTCATGCTAATCCGGCGGTGTCCAGGCTGTTCCGGCAGTGCACAGGGAGAACACTTGTGGGTTTGTGGTGGGCGGAAAAGGCAGTATCTAAACAAGGCCGAGTTGGGGTACATCTCGCCTTTCTCAGGCTTGTTAGCAGGGGGCGTTTTTGTGAACATAAGGGGGTCGATCAAGCCTTGCTGTTTCATGTTGTAAGAAGTGCGAGTCTGTTTTAAGAGCCACCATACTTCAACATGAGtcaaatttacataatgaaTTCAGTTTTACTGTTTGCGTTTATTTATTACAGGGCTGctattttcataaatgtaaatgaacaatGTCACAGAatcagttggaaaaaaaaacgaaatctaaaaaatatgaacgtttgaaatgtaaaataattggtTAATGAAATGGATGGGTGGTGTTGCATAAAACTAGTTAAATATAGGCAATAATTAAGACATTCTGGCATAGTGCTAACACTAATGGCAATTTTACTTTGGGattgtttatttacaatagTTAAGACCCAGTTTGAATGTAAATTTTGTATAGAGTGTAAAGTTTAAAGAGCATAGCAAGTTTGTACAGGTAAACACCAGTTCTTGTGAttataaaatctgaaatttaATCTTTGGTGGACTATTTTGATGAAGAAAACTGTTCCATGTGTGTTGCTAGTTTCTTTATCAAAGAACGGAAAGGTAATTGCCAtaaatccctttttttttttttttttttttctctcctttttaattttgtcctgcatttttttttttttttttttttttgggcggGGAAAAAAGCTGTGAAATTGTTCAACCTACTTTGTAACCAAAGATGCAAAGCTGtgtaattcaattttattttgtaatgcacactctatatgtatttttagttttgttactttttccttcacaacaaaaaaaatcttttgtTGCTGTTTAGCATGTTCTGCATGATCTGTAATCTTCAAACCACTTTCTTAcctcatgtttttattcagcaCTCTTATTGTAACATAAAGTAGTCTGTGAACAATGtcaatgaaaaaagaaaagagaaaaacagaacgAAGAGCTGGCGTTGATGGAGAAAAACCTAGTGTTGTACACACTAGTTAGAGAAATGAAGTGAGCCatcttttgttcatttaaatggTGTTTTGAATTTCATATGCAGAAAAAAGTTTTGTTACATTGcaaattttaatgtatttaataaatgcaacattCAGATTCCAAGTGTAGTGTACACTGAGtatttaaatgagaaacattgtacatttcaaaaatacGAATGGAAACCAGTAAATTCTGTATCAAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71007 lncRNA downstream 3526 37293892 ~ 37297002 (-) False AMCG00009408
TU71005 lncRNA downstream 15163 37281218 ~ 37285365 (-) False AMCG00009409
TU71004 lncRNA downstream 19437 37280743 ~ 37281091 (-) False AMCG00009409
TU70983 lncRNA downstream 32697 37201032 ~ 37267831 (-) False G56795
TU70984 lncRNA downstream 74526 37201032 ~ 37226002 (-) True G56795
TU71016 lncRNA upstream 10150 37315570 ~ 37367669 (-) False G56818
TU71032 lncRNA upstream 112994 37418414 ~ 37422521 (-) True G56831
TU71046 lncRNA upstream 161853 37467273 ~ 37469308 (-) False AMCG00009417
TU71067 lncRNA upstream 210549 37515969 ~ 37517654 (-) True G56861
TU71165 lncRNA upstream 331285 37636705 ~ 37734188 (-) True G56927
AMCG00009408 mRNA downstream 3346 37285576 ~ 37297182 (-) True AMCG00009408
AMCG00009409 mRNA downstream 15224 37280548 ~ 37285304 (-) True AMCG00009409
AMCG00009411 mRNA downstream 20776 37278886 ~ 37279752 (-) True AMCG00009411
AMCG00009407 mRNA downstream 22979 37275462 ~ 37277549 (-) True AMCG00009407
AMCG00009394 mRNA downstream 203201 37088783 ~ 37097327 (-) True AMCG00009394
AMCG00009412 mRNA upstream 21335 37326755 ~ 37332027 (-) True AMCG00009412
AMCG00009416 mRNA upstream 54665 37360085 ~ 37402881 (-) True AMCG00009416
AMCG00009417 mRNA upstream 161834 37467254 ~ 37476035 (-) True AMCG00009417
AMCG00009422 mRNA upstream 220111 37525531 ~ 37528188 (-) True AMCG00009422
AMCG00009426 mRNA upstream 225303 37530723 ~ 37535894 (-) True AMCG00009426
TU70990 other downstream 80452 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 1427931 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 1760718 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 1274865 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 1529896 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2843305 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 5363707 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 6177001 43482421 ~ 43945297 (-) True G58333

Expression Profile