RNA id: TU71007


Basic Information

Item Value
RNA id TU71007
length 1223
lncRNA type sense_over
GC content 0.42
exon number 3
gene id AMCG00009408
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37285576 ~ 37394988 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGgtctgcttttacattttatttgttttgtggggCTTTAAGTGGCAGCAGTTGAGCATTTGTTCCCAGATGGTACACACCGCTTTTCTGAGGTTTTATTCGTATCGCTTTCTTTGATAAATCACCCGATATACAGAACAACATCACAGAATTAAGATGCATAAATACTACAGGAAtggaaaaatcaatacatattgcTCCCAGTcaagttggatttttttttttttatatatatatatatattttttttaatccacctCAAATtctcactatttatttatttattaattatgatttttgtttcttagaCTCAAGCAACCCTTCCTCTGTAGTCTGTAGTCAGAACCGGTAACTGCTTTGATGAGCGCAGGGTCCTTTGCCAAGCTATGCTATGGACAATACACGGCCACAGTGGTTGCAGGTAGTagccagaaacaaaaacatttctctccACATACTATCcatctttcaaaataaagagGAAATTATACATGATTAGACTGTAAAAAGAACCTTGTTGAGAGAAAACAAGTCCACAAGTACAAAAGTATGCCATACAAATTTAGCATGTAGCGTAAGCGTTATATAACAATTACAAAGTAACCCGGaatttacagtatattatacTTGATCAAGGTCCTAGATTGGAATGTAAAATTTACAAATTGTATggcttttatacattttaaggcACGAGTAGGGAATGACCTGTAAGTTACACAACTTcgcaaaaaaatgaaaacaaacaaatgacagaTCCGGCCGAGCGCTGTGTTTTCCCAGGCCAGGCGCAGTGTAACTGTTGGAAAGGTTGAAGGTGGAATGTCAGGTGGACAGGACAAGGAGGGGACGTCTGTTCACTCTGCGTTACATTCCCATCCTGATGCTCTGGATGATCTGGAAGATTGCTGAGCCACACACGACGAAAATGAACAGCGCCAACAACCACGGTCCCACCGAGACCTTGTCATCTTGAGCGTTTCTCGTGCTTTTGGCCACGTTGCCCCTTTGCGTGATGTTCTTGCTGTGTTTCTCGTTGGCCATGCGGATTCTCTGCTTTGCCACCATTGTTTTGGTGCTGGTCCTCGGCTGTAGTAGTGCTGTGGAAGATGTCAGGAGAGCAAATTGCCAGCTTGCCGCTCGCAGCGAGTCCTTTTCCAGAAGGGTGTAATAAACACGGCGAAGTGCCTACGTAGACACAAATGTCTCCCCTCCCACAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71005 lncRNA downstream 8527 37281218 ~ 37285365 (-) False AMCG00009409
TU71004 lncRNA downstream 12801 37280743 ~ 37281091 (-) False AMCG00009409
TU70983 lncRNA downstream 26061 37201032 ~ 37267831 (-) False G56795
TU70984 lncRNA downstream 67890 37201032 ~ 37226002 (-) True G56795
TU70924 lncRNA downstream 125648 37167994 ~ 37168244 (-) True G56742
TU71014 lncRNA upstream 3542 37300544 ~ 37367669 (-) False G56818
TU71015 lncRNA upstream 3542 37300544 ~ 37305990 (-) True G56818
TU71016 lncRNA upstream 18568 37315570 ~ 37367669 (-) False G56818
TU71032 lncRNA upstream 121412 37418414 ~ 37422521 (-) True G56831
TU71046 lncRNA upstream 170271 37467273 ~ 37469308 (-) False AMCG00009417
AMCG00009409 mRNA downstream 8588 37280548 ~ 37285304 (-) True AMCG00009409
AMCG00009411 mRNA downstream 14140 37278886 ~ 37279752 (-) True AMCG00009411
AMCG00009407 mRNA downstream 16343 37275462 ~ 37277549 (-) True AMCG00009407
AMCG00009394 mRNA downstream 196565 37088783 ~ 37097327 (-) True AMCG00009394
AMCG00009390 mRNA downstream 372753 36900293 ~ 36921139 (-) True AMCG00009390
AMCG00009406 mRNA upstream 3526 37300528 ~ 37305420 (-) True AMCG00009406
AMCG00009412 mRNA upstream 29753 37326755 ~ 37332027 (-) True AMCG00009412
AMCG00009416 mRNA upstream 63083 37360085 ~ 37402881 (-) True AMCG00009416
AMCG00009417 mRNA upstream 170252 37467254 ~ 37476035 (-) True AMCG00009417
AMCG00009422 mRNA upstream 228529 37525531 ~ 37528188 (-) True AMCG00009422
TU70990 other downstream 73816 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 1421295 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 1754082 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 1283283 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 1538314 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2851723 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 5372125 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 6185419 43482421 ~ 43945297 (-) True G58333

Expression Profile