RNA id: TU71005


Basic Information

Item Value
RNA id TU71005
length 1092
lncRNA type sense_over
GC content 0.47
exon number 6
gene id AMCG00009409
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37280548 ~ 37285365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctcccctcctccagctcctctcGTGTGTGTTTCGTTGACCCGGGAAGAAAACGGAGCGGAATGGAGAATCGGTCGCTGTCCTTTACTCTTCTGTTTCTGGGGTTTTTCTCCCTGTATTCCGCCTCGGGCGACAACGTCGGAGGgaagaaattgaaaatgcagtttGCGACGGGACCACTGCTCAAATTCCAGATCTGcGTCTCCTGAGGATACAAGCGGGTGTTTGAGGAGTACACGCGGGTCTTGAACCAGCGGTATCCGGACATCCGCATTGAGGGGGAGAACTACCTGCCTCTTCCCATTTACCGGCACATCGCCTCCTTCCTTTCCATCTTTAAGCTAGCTGTTATAGGATTGATCATACTAGGTAAAGACCCCTTTGCCATTTTTGGTATTCAAGCTCCGGGTCTGTGGCAGTGGGGGCAGGAGAATAAGATCTATGCTTGTATGATGGTTTTCTTCCTTAGCAACATGATTGAGAACCAGTGCATGTCCACCGGTGCGTTTGAAATCACATTAAATGATGTCCCAGTGTGGTCTAAACTGGAGTCGGGTCACCTCCCATCGATGCAGCAACTCGTCCAGATcctggaaaatgaaatgaagcTCAATGCTCGCATGGACTCGCTCCCACACCATCGGTCGTAACCTCGCCTTCACACGCCGGAGTTCCCTCCCGTTTGAGTCGGAAGCTCTCCCATGGCAGTGACCTGATACCTATGAAGGCCTGCACTGAAAGCAGAAGTCTGCTAGTGTGGGCTGGATGCCTCTTCAGTCTTGCTGACCTCTGGAGGAGTTTGCTTCAAGCAGGAGGGACCTTTTGCATGGGGGGTGGATGTTCATTTCTACTGCAGCACATTCATTATggtgcaataaaatgtatagtttcacCTTTTTATTCATCATTTGAGCCCTTGTATAGCTACATGTCGATGTCcagttgtattttgtattaacaactcAAAACAAAGGTCAGGCAAAAcctataaattaaattaattttgtttctgttcggttgtaattttttatatttctttttatagCATAAACTGgaagtaaaattatattaaagtgGATAACATctaacagaa

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU71004 lncRNA downstream 127 37280743 ~ 37281091 (-) False AMCG00009409
TU70983 lncRNA downstream 13387 37201032 ~ 37267831 (-) False G56795
TU70984 lncRNA downstream 55216 37201032 ~ 37226002 (-) True G56795
TU70924 lncRNA downstream 112974 37167994 ~ 37168244 (-) True G56742
TU70874 lncRNA downstream 409395 36869548 ~ 36871823 (-) True G56710
TU71007 lncRNA upstream 8527 37293892 ~ 37297002 (-) False AMCG00009408
TU71009 lncRNA upstream 8527 37293892 ~ 37394988 (-) False AMCG00009408
TU71014 lncRNA upstream 15179 37300544 ~ 37367669 (-) False G56818
TU71015 lncRNA upstream 15179 37300544 ~ 37305990 (-) True G56818
TU71016 lncRNA upstream 30205 37315570 ~ 37367669 (-) False G56818
AMCG00009411 mRNA downstream 1466 37278886 ~ 37279752 (-) True AMCG00009411
AMCG00009407 mRNA downstream 3669 37275462 ~ 37277549 (-) True AMCG00009407
AMCG00009394 mRNA downstream 183891 37088783 ~ 37097327 (-) True AMCG00009394
AMCG00009390 mRNA downstream 360079 36900293 ~ 36921139 (-) True AMCG00009390
AMCG00009391 mRNA downstream 406489 36873672 ~ 36874729 (-) True AMCG00009391
AMCG00009408 mRNA upstream 211 37285576 ~ 37297182 (-) True AMCG00009408
AMCG00009406 mRNA upstream 15163 37300528 ~ 37305420 (-) True AMCG00009406
AMCG00009412 mRNA upstream 41390 37326755 ~ 37332027 (-) True AMCG00009412
AMCG00009416 mRNA upstream 74720 37360085 ~ 37402881 (-) True AMCG00009416
AMCG00009417 mRNA upstream 181889 37467254 ~ 37476035 (-) True AMCG00009417
TU70990 other downstream 61142 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 1408621 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 1741408 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 1294920 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 1549951 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2863360 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 5383762 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 6197056 43482421 ~ 43945297 (-) True G58333

Expression Profile

TU71005 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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TU71005 Expression in each Bioproject

Bar chart with 7 bars.
TU71005 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031908 True 1301 mRNA 0.42 6 NC_007113.7 9684305 ~ 9696283 (-)
grasscarp (Ctenopharyngodon idella) TU26310 True 327 TUCP 0.43 2 CI01000003 1864608 ~ 1866921 (+)
rainbow trout (Oncorhynchus mykiss) TU158548 True 335 lncRNA 0.36 1 NC_048566.1 36905465 ~ 36905799 (+)
eurasian perch (Perca fluviatilis) TU158548 True 1861 lncRNA 0.42 6 NC_053122.1 24863027 ~ 24870087 (+)
eurasian perch (Perca fluviatilis) TU186879 True 1830 lncRNA 0.41 2 NC_053124.1 36184037 ~ 36193304 (+)
mexican tetra (Astyanax mexicanus) TU186879 False 1209 lncRNA 0.48 6 NC_035912.1 3115442 ~ 3119483 (+)
mexican tetra (Astyanax mexicanus) TU158548 True 764 lncRNA 0.48 9 NC_035909.1 41356722 ~ 41359883 (-)