RNA id: AMCG00009412


Basic Information

Item Value
RNA id AMCG00009412
length 2031
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00009412
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37326755 ~ 37332027 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGAAAATGCCGGCgaaaaagaaaagctgcttCCAGATCACCAGTGTGACACAGGCGCAGGTTGCGGCCAGCAGCATCACGGACGACACGGAGAGCTTGGACGACCCGGACGAATCCCGGACCGAAGACGTGTCATCGGAAATATTCGACGTGTCCCGGGCCACGGATTTTGAACCGGAGGGAGTGTGCGATAGGAGTTCGTCCGAAGAGACTCTGAACAACGTCGGCGAGACGGAAGCCTCCGCAGTGGTGGCACCTCATATACCTCAAGATGGGCAGCTACTGGCAGGGTCGGGGTCTCCCAATGGGGGGCACCCTTTGAGAAGCACAGTCTTGGCAGGCGTCGTTCATGGCAATCCGCAAGTTTTGGGAACAGGATTAGCGGCGGCAACTGCAGCGGCCCAGCCCCCTCCCGCCGCGGCTGGAAACGTGCAGCAGCAAACAGGACCCGCCGGCGCCGGAGGGGCGGTAAATGCGGCCTCGGTCACCTCTCAGCCTGCTCCTGCCGCCGTCGCCGCAAgtacaactactactacaactacaactTGCAGTTCACGTTTCAGGGTCATCAAACTTGATCACGGTACAGGAGAGCCCTTCAGGAGGGGGAGGTGGACTTGCATGGAGTTCTATGAGAGAGATTCTGAAGGCTCCATTATTACCAGGACTGTGGATAGCATTAAGCACCCTACCTTGGATCACAACACAGACAGGGACAGCGGGCTGGGAGCCACTGGGGGCTCTGTAGTGGCCCCCACAGCTCACTCTGTGCTGGGTTTGGACTCCATGGCCGACGGCTCCTTTGCTCCTCACCCTCAACAGACGGATCCGCAGAGTTACAACATGGGGCACCAGACTTTCCAGCCCCCTGGGTATTCCCCTCAAGTGATGGCAGGGCCTGCACAGCAGGTAGCGCAGGGGGGCATGCAGCCTACTGCCCCCCAGAACATCCTGCCCCACGGGCACAATGGCCTGAGTATGCCGTCACTTCAGACCATGCCCTTGCAGCAGGTGCAGAAGTCACCCAGCCTGGCCCCCCAAGTCACCCAGCCTCCGCAGTTTGCCTACACAACCCAGGCCCACCAGCTCGGCCCCAGCCATCACTTGTCCAGTCAAGGCTCTCTGGTACCCGGCACCCAAGGGGATTACCGACAGCAGCAGCACCTACCTGTCATACACCCCCAGCCTGGCGGATTGCCGGGGGCTACAACACAGGGCCTCCCCGTGGCCAGTCTTCCCGTGGCCCAGCCTCTCAGTCAGGGCCCTTCGCCTGTCATGACTCCTGCTGCCAGCGGCGTGGCTCCAGTGTTGGGGCTTCAGGGCCAGTCTGCTGACTCGGCTGGGCAGGGTGCTGTAGGATTGCCGGGTGGCCAGACGTCACTGCAACAGTCTTGTACTGGAGGAGGAGGTGCAGCACAGCAAGGTGTGGGTTCAGTGCCTGGAGTGGCGCAGCCTttaggggtggggggaggaggaggtcCAGTGTCGGGGGGACCAAGCAGCCCTCACACAGTGGCCCCCGGCGTCCAGAACATGCCTGCTGTCGTGTCCAGTACTGGCATCACGAGCGGGTCGACCAGTGTGCCTACCGCAGTGCCCAGCACATCCAGCACTCCCATCTCCATGCCAAATGCCCTGTCGGCAATCGGACAGTCGCAGGTGCCCCAAGGCACCAACATAGGGGCGCAGACCGGGGGGTTGGTGATGCAGGGGGGTGCCGCCCCCCCTCCCACCTTCAATCAGTTCCCAGCCCAGGCCACCATCAGCCAGGTGGATGAGAACCGAAGGAAGTCAGATGCCCTACCTCAGCCCCCAGCCACGTCGGGAAAAGACCTGATGAAGCCTTTGATTCCAGAGCCCCTGCAGCTGTCTGCAGCCACCCCCATGAACAGCTTGACCACCACAATGTTCGGCATTCCCATTCCCTTGGACGGCGATGAGGACAGGTGTACCGAGCTGCTGAAGGAGTTCCCGAAGAACATTCCAAGCTGGCAGAAGCTCATGTGTTTTCAGATCTTGTCGGTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71015 lncRNA downstream 20765 37300544 ~ 37305990 (-) True G56818
TU71007 lncRNA downstream 29753 37293892 ~ 37297002 (-) False AMCG00009408
TU71005 lncRNA downstream 41390 37281218 ~ 37285365 (-) False AMCG00009409
TU71004 lncRNA downstream 45664 37280743 ~ 37281091 (-) False AMCG00009409
TU70983 lncRNA downstream 58924 37201032 ~ 37267831 (-) False G56795
TU71032 lncRNA upstream 86387 37418414 ~ 37422521 (-) True G56831
TU71046 lncRNA upstream 135246 37467273 ~ 37469308 (-) False AMCG00009417
TU71067 lncRNA upstream 183942 37515969 ~ 37517654 (-) True G56861
TU71165 lncRNA upstream 304678 37636705 ~ 37734188 (-) True G56927
TU71208 lncRNA upstream 574378 37906405 ~ 37907571 (-) False AMCG00009437
AMCG00009406 mRNA downstream 21335 37300528 ~ 37305420 (-) True AMCG00009406
AMCG00009408 mRNA downstream 29573 37285576 ~ 37297182 (-) True AMCG00009408
AMCG00009409 mRNA downstream 41451 37280548 ~ 37285304 (-) True AMCG00009409
AMCG00009411 mRNA downstream 47003 37278886 ~ 37279752 (-) True AMCG00009411
AMCG00009407 mRNA downstream 49206 37275462 ~ 37277549 (-) True AMCG00009407
AMCG00009416 mRNA upstream 28058 37360085 ~ 37402881 (-) True AMCG00009416
AMCG00009417 mRNA upstream 135227 37467254 ~ 37476035 (-) True AMCG00009417
AMCG00009422 mRNA upstream 193504 37525531 ~ 37528188 (-) True AMCG00009422
AMCG00009426 mRNA upstream 198696 37530723 ~ 37535894 (-) True AMCG00009426
AMCG00009423 mRNA upstream 205494 37537521 ~ 37543355 (-) True AMCG00009423
TU70990 other downstream 106679 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 1454158 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 1786945 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 1248258 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 1503289 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2816698 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 5337100 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 6150394 43482421 ~ 43945297 (-) True G58333

Expression Profile