RNA id: AMCG00009413



Basic Information


Item Value
RNA id AMCG00009413
length 1887
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00009413
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37405848 ~ 37410371 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCACAGGGCTGTCTGTGTGCATCCCTCCCCTCTGCCTCCAGCCCACTGAGCCCTGCCATGCCCTTCACAGGACTGGCTAACACTAAGGACTGATGCTCGCGCCTGCTCAGAGCTCTAAATACAAAGGGCTGTTGCTTTttcgattttattttatttgaccgTTTTAACTTTTCCAACCATGAGGATCTTCATTGCTTTTGAGGGTTTGTGTGAGCCGTTTGACATTTCCCAGGACCAGACAGTAAGGGCTGTAAAACTGATGATCAAGGACTTTTTCCATGTGCAGCTCTCAGATGATAGGCAGGTGCGCCGGTTCCTGGAGCTGAGCTATGCGGGGGCGTGTCTGCAGGACAACTGGGTGCTGGCCGATGTGGGCATCACCCCGGGGGTCACTCTCAGGTGTGTCCTCAAGGAGACACTGCCCATCATGGGGAACATCTTCCTCCTGAGCACTGCCGTATCCCACCTGAAGACTCAGGTGTCCCGGCAGTGTGGCCTCCCGGTCAGCGTGTTCAGGCTCCGCACTCCCAATGGGGTGGAGCTCTATGACTGCAACCGACTGGACAGTTACGGGATAGATGTAGGAGCCACTTTGCATTTGGACGTGTGGGCCGGATGGAAGGAGTTCTTGAGAGGCTGCTTACTGGGTCACAAGCACTCAGTCCGGCACCGGCTCTCACAGCAAGAGAACTTGCTGAGgttcCAGCAGCGAGTGGCTCTGTACATTGCGGCATTCCTGGGGCACCTGAACCTGGCAGGCTGGCTGCTGGGTGCAGGGGTGCGTGCGGATGAGCCGGTGGGGGTGCACCCCTCGCGGGAGTGGTGCCGCGACACTGACCACTCCGACGTCGCCAAGTGCCCCGTACATGCTGCCGTTGAGGCTGGCCAACTGCTGATCTTGAAGCTGTTTCTGAGCAGTAGTGTGGAGTGCCTGGACTGCATAGACCCTTGGGGCCACAGCCTGCTGCAGATCGCTATCCGTCAGAGACACAAGGATACTGTGCTCTACCTGGCCTCCAAGCTGTGGTCCGTGGTCTCCTGCCCCCTGCTCTCACTGCCCCTCCGCACCTACGTGAAGATCAAGCGCTGGCTGCTGCATGCCCAGAAAACAATCGCATCCAGGAAGTTCCTTGGCCGGTCTGTGAGGGTCGGGGACAGCGTCCTGGTGGATGGCTTCACCCAGCTTGAGACGAGGGCGAAGGTCAAACTCAAGACCAAAGATGTCCTCTCTGCTAGGGTTTCAGGAGGAGGCTGTGTTGCCCCAACCTGGCCTGCAGGGTGCGGACTGGAGGACAGCTCACTTCCTAGAAACATGCGGCTGCCTCGGTTACAACCTGCCACCAGAGACAGAGTCAGACGGAGGAGAAGCAACAACAGGAGCGTGAGGAGAGCAGAATGCCCGTCCCCTGAGGACAGTGAGAGGAATCAGAACTTGTGGAAGACCAAAGTGCCCCTTCCCCCCATCTCCCATGACACCAACCCCCGGCCGTGCTTCATCTACGCCTCCCCGGACGCCCCCGCCATCCTCTCTTCTTCGCTGGCCTCGTTCTCTGACCACAGTGGACGCACACTCAGGGAGAACGCCATCTTCTGCTTGGCACTGGCCAGTTCCTTTACAGAGAAGCCGTGGCTGCAGCAGCTTGGGGTAGCTAGGACCCTGGCCCGACGAACAGTGCAGAAGATCAGTTAGAACAACATGCTGTCACAGACCCTCGACCCAGTTGTCCTGAATGAAAGGAACAATCAAGAACATAGGACACCAGAGTTAGGGTTTGAGAATTGGTTACAGCTACATTTCCCAGCATTTGTGGCCAACTGaacagtgtgttgtttttgaatCATGGAATtatcacataaataaaacatctgattAATTTTAACTGTGGA

Function


GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU70966 lncRNA upstream 108846 37293903 ~ 37297002 (+) True AMCG00009404
TU70962 lncRNA upstream 114183 37285843 ~ 37291665 (+) True G56775
TU70938 lncRNA upstream 210760 37193726 ~ 37195088 (+) True G56754
TU70929 lncRNA upstream 217070 37188568 ~ 37188778 (+) True G56747
TU70891 lncRNA upstream 376306 37029206 ~ 37029542 (+) True G56712
TU71031 lncRNA downstream 49671 37460042 ~ 37463505 (+) True AMCG00009415
TU71098 lncRNA downstream 137942 37548313 ~ 37553141 (+) False AMCG00009429
TU71111 lncRNA downstream 200884 37611255 ~ 37616696 (+) True AMCG00009428
TU71241 lncRNA downstream 653419 38063790 ~ 38068153 (+) True G56982
TU71255 lncRNA downstream 719711 38130082 ~ 38133966 (+) True G56995
AMCG00009405 mRNA upstream 40127 37348108 ~ 37365721 (+) False AMCG00009405
AMCG00009410 mRNA upstream 103672 37298590 ~ 37302176 (+) True AMCG00009410
AMCG00009404 mRNA upstream 108839 37293950 ~ 37297009 (+) False AMCG00009404
AMCG00009398 mRNA upstream 127963 37268364 ~ 37277885 (+) True AMCG00009398
AMCG00009395 mRNA upstream 139825 37262551 ~ 37266023 (+) True AMCG00009395
AMCG00009414 mRNA downstream 3393 37413764 ~ 37417955 (+) True AMCG00009414
AMCG00009415 mRNA downstream 11646 37422017 ~ 37460657 (+) False AMCG00009415
AMCG00009420 mRNA downstream 66819 37477190 ~ 37492489 (+) True AMCG00009420
AMCG00009418 mRNA downstream 84629 37495000 ~ 37499186 (+) True AMCG00009418
AMCG00009421 mRNA downstream 95392 37505763 ~ 37516480 (+) True AMCG00009421
TU70945 other upstream 38177 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2016521 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3374403 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3387033 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5240483 32161760 ~ 32165365 (+) True G56060
TU71113 other downstream 199972 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1031884 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2024529 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2537635 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 2692012 40102383 ~ 40104948 (+) False AMCG00009516

Expression Profile


AMCG00009413 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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AMCG00009413 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00009413 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.